| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,918,727 | A→C | 26.2% | T323T (ACT→ACG) | argI ← | ornithine carbamoyltransferase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,918,727 | 0 | A | C | 26.2% | 143.9 / 80.5 | 107 | T323T (ACT→ACG) | argI | ornithine carbamoyltransferase 1 |
| Reads supporting (aligned to +/- strand): ref base A (41/38); new base C (21/7); total (62/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.47e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.60e-01 | |||||||||||
Only 100 of 108 total aligned reads displayed.
TTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGACT > minE/2918658‑2918796 | ttGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAg > 1:3224325/1‑71 (MQ=255) tGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAg < 1:3989188/70‑1 (MQ=255) gTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGt < 1:3399092/70‑1 (MQ=255) tCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTa > 1:2017864/1‑66 (MQ=255) tCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCa > 1:3347589/1‑70 (MQ=255) tCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCa > 1:3341005/1‑70 (MQ=255) tCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCa > 1:5341780/1‑70 (MQ=255) ccGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATAc < 1:5545724/71‑1 (MQ=255) cATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGtt > 1:4954906/1‑71 (MQ=255) aTCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGttt < 1:3802137/71‑1 (MQ=255) aTCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGttt > 1:2628298/1‑71 (MQ=255) aTCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGttt < 1:2768712/71‑1 (MQ=255) tCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGttt < 1:4029539/70‑1 (MQ=255) cTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTa > 1:2053410/1‑57 (MQ=255) tttATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAg > 1:329472/1‑54 (MQ=255) tttATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAg > 1:350076/1‑54 (MQ=255) tttATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTcc > 1:2134231/1‑71 (MQ=255) tataGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCAGc > 1:2111593/1‑71 (MQ=255) taGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTAGATa > 1:5103857/1‑49 (MQ=255) aTAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATc > 1:877360/1‑70 (MQ=255) aGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGt > 1:1603840/1‑44 (MQ=255) aGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCa > 1:345850/1‑49 (MQ=255) ttattTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTcc > 1:3790499/1‑55 (MQ=255) tattTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATAc > 1:3946427/1‑46 (MQ=255) attTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATg > 1:2060654/1‑71 (MQ=255) tttACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATg < 1:644712/70‑1 (MQ=255) tttACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATAAAAAACAATg < 1:4485733/70‑1 (MQ=255) tGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATAc < 1:808261/39‑1 (MQ=255) tGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATAc < 1:339861/39‑1 (MQ=255) tGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTc > 1:1120100/1‑46 (MQ=255) caaGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTcgcc > 1:2189689/3‑70 (MQ=255) gAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTgg < 1:5353396/68‑1 (MQ=255) aaGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGcc > 1:66774/2‑49 (MQ=16) aaGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGcc > 1:353828/2‑49 (MQ=16) aaGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGcc > 1:4582003/2‑49 (MQ=16) aaGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTcg < 1:5402266/54‑2 (MQ=255) aaGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTcgccg > 1:4261758/2‑69 (MQ=255) aGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGc > 1:4394633/1‑47 (MQ=16) aGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGc > 1:59125/1‑47 (MQ=16) aGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGc > 1:4102399/1‑47 (MQ=16) aGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGc > 1:5206397/1‑47 (MQ=16) aGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGc > 1:3633256/1‑47 (MQ=16) aGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTcg < 1:1345654/54‑2 (MQ=255) aGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAacac < 1:1100466/59‑1 (MQ=255) aGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACaa > 1:170761/1‑61 (MQ=255) aGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTggcgg > 1:4924839/1‑70 (MQ=255) aGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTggcgg < 1:4542014/70‑1 (MQ=255) aGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTggcgg > 1:3020288/1‑70 (MQ=255) gCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCa < 1:4845447/71‑1 (MQ=255) cGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCaaaaa > 1:4725549/1‑56 (MQ=255) cGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCaaaaa > 1:757299/1‑56 (MQ=255) gcgcgACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCa < 1:4935280/67‑1 (MQ=255) cgcgACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGAtt > 1:5627546/1‑71 (MQ=255) gcgACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACa > 1:1689430/1‑54 (MQ=255) gcgACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTc > 1:526949/1‑71 (MQ=255) gcgACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTc > 1:5537665/1‑71 (MQ=255) cgACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCg < 1:3463676/71‑1 (MQ=255) cgACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCg < 1:1460990/71‑1 (MQ=255) atcATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAacac < 1:5057015/48‑1 (MQ=255) tcATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCaaac < 1:2630418/70‑2 (MQ=255) tcATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTCGTCGAACACGATGCTCGCCGCCGACTCaaac < 1:4758191/70‑2 (MQ=255) ccATCACCGCTTTGATAGTATGCATACGGTTTTCCg < 1:3460234/36‑1 (MQ=255) ccATCACCGCTTTGATAGTATGCATACGGTTTTCCg < 1:3980372/36‑1 (MQ=255) ccATCACCGCTTTGATAGTATGCATACGGTTTTCCg < 1:3987317/36‑1 (MQ=255) ccATCACCGCTTTGATAGTATGCATACGGTTTTCCg < 1:639647/36‑1 (MQ=255) cATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTc > 1:376165/1‑66 (MQ=255) cATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGaa > 1:1033733/1‑69 (MQ=255) cATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCaaaca > 1:3081639/1‑69 (MQ=255) cATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCaaaca > 1:3187916/1‑69 (MQ=255) aTCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAAc < 1:4863370/47‑1 (MQ=255) aTCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGAc < 1:195660/71‑1 (MQ=255) aTCACCGCTTTGATAGTATGCATACGGTTTTACGCCTGATCAAAAACAATGCTgg > 1:3327857/1‑55 (MQ=255) aTCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCgaac > 1:3876414/1‑44 (MQ=255) aTCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCgaac > 1:3346911/1‑44 (MQ=255) aTCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAacacga > 1:4012771/1‑47 (MQ=255) aTCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCaaa > 1:1322001/1‑68 (MQ=255) aTCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCAAacac > 1:4587746/1‑71 (MQ=255) aTCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCAAacac > 1:1985400/1‑71 (MQ=255) aCCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACa > 1:2851831/1‑45 (MQ=255) aCCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCt < 1:4749531/70‑1 (MQ=255) aCCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCt < 1:2302600/70‑1 (MQ=255) aCCGCTTTGATAGTATGCATACGGTTTTCCG‑CTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCtca > 1:5102262/1‑71 (MQ=255) ccGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCtca < 1:447210/71‑1 (MQ=255) ccGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCAAACACCtcg > 1:2938459/1‑70 (MQ=255) ccGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCAAACACCtcg > 1:2910214/1‑70 (MQ=255) cGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCtcat > 1:3119782/1‑71 (MQ=255) cGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTcg < 1:295088/37‑2 (MQ=16) gCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCt < 1:4946635/47‑1 (MQ=255) cTTTGATAGTATTCATACGGTTTTCCGCCTGATCAAAAACaa > 1:4833172/1‑42 (MQ=255) cTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACaa > 1:306636/1‑42 (MQ=255) tttGATAGTATGCATACGGTTTTCCGCCTGATCAAAAAc < 1:674663/39‑1 (MQ=255) tttGATAGTATGCATACGGTTTTCCGCCTGATCAAAAAc < 1:3987717/39‑1 (MQ=255) tttGATAGTATGCATACGGTTTTCCGCCTGATCAAAAAc < 1:1011809/39‑1 (MQ=255) tttGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAg > 1:2536734/1‑71 (MQ=255) tGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGt < 1:1198552/70‑1 (MQ=255) tGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGt < 1:961524/70‑1 (MQ=255) gATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTg < 1:2907587/70‑1 (MQ=255) aTAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGAc < 1:1445269/71‑1 (MQ=255) aTAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGAc > 1:1402036/1‑71 (MQ=255) tAGTATCCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGACt < 1:5361374/71‑1 (MQ=255) | TTGTATTTCCCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGACT > minE/2918658‑2918796 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |