| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,960,652 | G→A | 12.5% | intergenic (+102/+318) | yjjV → / ← yjjW | predicted DNase/predicted pyruvate formate lyase activating enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,960,652 | 0 | G | A | 12.5% | 124.7 / 7.6 | 48 | intergenic (+102/+318) | yjjV/yjjW | predicted DNase/predicted pyruvate formate lyase activating enzyme |
| Reads supporting (aligned to +/- strand): ref base G (24/18); new base A (4/2); total (28/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.09e-01 | |||||||||||
AATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCT > minE/2960592‑2960720 | aaTGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAgg < 1:2266448/71‑1 (MQ=39) gCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGt > 1:3815478/1‑71 (MQ=39) ccTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGtt < 1:418397/71‑1 (MQ=39) ccTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGtt < 1:1261968/71‑1 (MQ=39) tGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGc < 1:1348277/66‑1 (MQ=40) gATGCGACGCTT‑ACGCGTCTTATCATGCCTAC‑GG‑‑‑GA‑ACCTGACCGTAGGCCGGATAAGGCGTACAcgccg > 1:1386597/1‑70 (MQ=2) gATGCGACGCTT‑ACGCGTCTTATCATGCCTAC‑GG‑‑‑GA‑ACCTGACCGTAGGCCGGATAAGGCGTACAcgccg > 1:1462730/1‑70 (MQ=2) aTGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGT‑TCCGAACCGTAGGCCGGATAAGGCGTTCAcg < 1:4287881/71‑1 (MQ=255) aTGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCAcg > 1:1086477/1‑71 (MQ=255) tGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCAcgc < 1:3833668/71‑1 (MQ=255) cGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTACG‑GGCGAAGTGTAGGCCGGATAAGGCGTTCAcgccg < 1:1777616/71‑1 (MQ=2) aCGCTTAACGCGTCTTATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTGCACGCCGCa < 1:3472681/71‑1 (MQ=255) ttAACGCGTCTTATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCAcgc < 1:4207551/63‑1 (MQ=255) ttAACGCGTCTTATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCg > 1:1039706/1‑71 (MQ=40) tgcgcgTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCgg < 1:1820923/68‑1 (MQ=2) tgcgcgTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCgg < 1:4959265/68‑1 (MQ=2) aaCGCGTCTTATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGGATCCgg < 1:741070/70‑1 (MQ=255) cgcgTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATc > 1:2786095/1‑65 (MQ=2) cgcgTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATc > 1:298579/1‑65 (MQ=2) cgcgTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATc > 1:1885465/1‑65 (MQ=2) cgcgTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATc > 1:1474758/1‑65 (MQ=2) cgTCTTATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGtt < 1:1296206/71‑1 (MQ=34) ttATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGgcg > 1:5653810/1‑71 (MQ=34) tATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGgcg > 1:3397393/1‑70 (MQ=35) aTCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGgcg < 1:2672720/69‑1 (MQ=35) aTCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGca > 1:933658/1‑71 (MQ=34) aTCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGca > 1:743241/1‑71 (MQ=34) tCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGcac < 1:416404/71‑1 (MQ=34) tCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGca > 1:1875457/1‑70 (MQ=35) cATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGcac > 1:1753965/1‑70 (MQ=35) cATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGcac > 1:505483/1‑70 (MQ=35) aTGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCa > 1:2605059/1‑45 (MQ=32) tGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAAt > 1:1886977/1‑71 (MQ=34) tGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAAt < 1:4642378/71‑1 (MQ=34) ccTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCAcgc > 1:2448657/1‑45 (MQ=38) ccTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGc > 1:5293163/1‑71 (MQ=34) tACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGca < 1:2823031/63‑1 (MQ=35) aCAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGca < 1:2440780/62‑1 (MQ=35) cAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTg < 1:713638/70‑1 (MQ=35) cAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGAGcac > 1:2691461/1‑62 (MQ=25) ttGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCAcg < 1:1972026/35‑1 (MQ=33) ttGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGa > 1:4229766/1‑71 (MQ=34) aaCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCt > 1:5218969/1‑67 (MQ=33) aaCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCt > 1:3922553/1‑67 (MQ=33) aaCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCt > 1:3547113/1‑67 (MQ=33) aCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATg > 1:4508797/1‑59 (MQ=31) aCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATg > 1:2650947/1‑59 (MQ=31) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCt > 1:1568240/1‑71 (MQ=39) | AATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGT‑GCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCT > minE/2960592‑2960720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |