| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 189,184 | G→T | 14.2% | V227V (GTG→GTT) | ldcC → | lysine decarboxylase 2, constitutive |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 189,184 | 0 | G | T | 14.2% | 199.8 / 14.3 | 70 | V227V (GTG→GTT) | ldcC | lysine decarboxylase 2, constitutive |
| Reads supporting (aligned to +/- strand): ref base G (30/30); new base T (5/5); total (35/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
CGCGCGGACTTTTGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCT > minE/189115‑189246 | cgcgcgGACTTTTGGCGCGTAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATtgtg > 1:2637103/1‑70 (MQ=255)cgcgcgGACTTTTGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATtgtg > 1:1445587/1‑70 (MQ=255) cgcgGACTTTTGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGt < 1:2453464/71‑1 (MQ=255) cgcgGACTTTTGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGt < 1:1293831/71‑1 (MQ=255) gcgGACTTTTGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTa < 1:2251945/71‑1 (MQ=255) gcgGACTTTTGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTa < 1:616758/71‑1 (MQ=255) gcgGACTTTTGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTa < 1:2853986/71‑1 (MQ=255) cgGACTTTTGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTa < 1:4756452/70‑1 (MQ=255) aCTTTTGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTa > 1:626537/1‑71 (MQ=255) cTTTTGGCGCGGAAAAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATtgtg > 1:4392970/1‑62 (MQ=255) ttttGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATg < 1:1621735/67‑1 (MQ=255) ttGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATtgtg > 1:1227817/1‑59 (MQ=255) ttGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGt > 1:4031325/1‑66 (MQ=255) ttGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGt > 1:5432832/1‑66 (MQ=255) ttGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTAcgcc > 1:2600101/1‑71 (MQ=255) ttGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTAcgc < 1:3486785/70‑1 (MQ=255) ggAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATg < 1:1224725/58‑1 (MQ=255) ggAACAGAGTTATATCGTTACCAACGGAACATCGAAGTCGAACAAAATTGTGGGTATg < 1:2295070/58‑1 (MQ=255) aCAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCAGCGCCATcc > 1:4556846/1‑70 (MQ=255) agTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAg < 1:975876/71‑1 (MQ=255) agTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACCCCGCGCCATCCGGCAg > 1:3363731/1‑71 (MQ=255) ttATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAg < 1:3058383/69‑1 (MQ=255) ttATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAg < 1:1045797/69‑1 (MQ=255) ttATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAg < 1:510882/69‑1 (MQ=255) ttATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAg < 1:4825667/69‑1 (MQ=255) ttATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAg < 1:1249830/69‑1 (MQ=255) atatCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACg > 1:935480/1‑71 (MQ=255) tCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGc > 1:4258031/1‑69 (MQ=255) tCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTg < 1:5031045/71‑1 (MQ=255) cGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATc > 1:1838877/1‑57 (MQ=255) cGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCg < 1:4374689/59‑1 (MQ=255) cGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCg < 1:4310534/59‑1 (MQ=255) cGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGt > 1:1360436/1‑71 (MQ=255) gTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGtt < 1:5474917/71‑1 (MQ=255) gTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGtt > 1:3171354/1‑71 (MQ=255) gTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGtt > 1:5463265/1‑71 (MQ=255) cAACGGAACATCGACGTCGAACAAAATTGTGGGTATg < 1:1512947/37‑1 (MQ=255) cAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCg < 1:2149679/71‑1 (MQ=255) cAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCg < 1:1698571/71‑1 (MQ=255) aaCGGAACATCGACGTCGAACAAAATTGTGGGTATGt > 1:2310284/1‑37 (MQ=255) aaCGGAACATCGACGTCGAACAAAATTGTGGGTATGt > 1:5230049/1‑37 (MQ=255) aaCGGAACATCGACGTCGAACAAAATTGTGGGTATGt > 1:1804664/1‑37 (MQ=255) aaCGGAACATCGACGTCGAACAAAATTGTGGGTATGTAcgcc > 1:2951983/1‑42 (MQ=255) aaCGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGa > 1:4479159/1‑71 (MQ=255) aaCATCGACGTCGAACAAAATTGTGGGTATTTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGc > 1:4730973/1‑70 (MQ=255) aCATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCaa < 1:3115149/71‑1 (MQ=255) aCATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCaa < 1:2695939/71‑1 (MQ=255) tCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTg < 1:4299323/54‑1 (MQ=255) tCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTg < 1:494279/54‑1 (MQ=255) gACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCa > 1:1845794/1‑44 (MQ=255) gACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCa > 1:4508232/1‑44 (MQ=255) gACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCa > 1:4645180/1‑44 (MQ=255) gACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTa > 1:905759/1‑47 (MQ=255) gACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTa > 1:4824033/1‑47 (MQ=255) gACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCt > 1:5535877/1‑51 (MQ=255) aCGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGt < 1:3666901/69‑1 (MQ=255) cGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCa > 1:1151564/1‑70 (MQ=255) gcGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCaca > 1:1889760/2‑68 (MQ=255) gcGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCaca > 1:352896/2‑68 (MQ=255) gcGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCaca > 1:5164249/2‑68 (MQ=255) cGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCaca < 1:4449368/69‑3 (MQ=255) cGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCaca < 1:5103456/69‑3 (MQ=255) cGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCACaaa < 1:5229770/71‑1 (MQ=255) cGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCACaaa > 1:5292984/1‑71 (MQ=255) cGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCACaaa < 1:3650730/71‑1 (MQ=255) cGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCACaa < 1:4096418/70‑1 (MQ=255) gAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCACAAAt > 1:1707822/1‑71 (MQ=255) aaCAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATc > 1:2954425/1‑71 (MQ=255) aaCAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATc > 1:2947894/1‑71 (MQ=255) aaaaTTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCt > 1:1921515/1‑71 (MQ=255) aaaTTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGAc > 1:5329326/1‑50 (MQ=255) aaaTTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGAc > 1:410526/1‑50 (MQ=255) ttGTGGGTATGTACGCCGCGCCATCCGGCAGTACTCTGTTGATc < 1:4624307/44‑1 (MQ=255) ttGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATc < 1:2222198/44‑1 (MQ=255) | CGCGCGGACTTTTGGCGCGGAACAGAGTTATATCGTTACCAACGGAACATCGACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCT > minE/189115‑189246 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |