| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 412,564 | A→C | 75.0% | intergenic (‑209/+80) | leuS ← / ← lnt | leucyl‑tRNA synthetase/apolipoprotein N‑acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 412,564 | 0 | A | C | 75.0% | 99.0 / 21.0 | 48 | intergenic (‑209/+80) | leuS/lnt | leucyl‑tRNA synthetase/apolipoprotein N‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (9/3); new base C (20/16); total (29/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
ATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGA > minE/412499‑412633 | aTTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGtt > 1:865419/1‑70 (MQ=255)aTTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTAAAGTCAGtt > 1:4312707/1‑70 (MQ=255) tAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAAc > 1:2356132/1‑71 (MQ=255) aaTTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAAc > 1:1339761/1‑70 (MQ=255) aaTTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAAc < 1:5446104/70‑1 (MQ=255) aTTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAg < 1:1552750/64‑1 (MQ=255) aTTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAg < 1:2528471/64‑1 (MQ=255) ttACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGtt < 1:3149465/64‑1 (MQ=255) tACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAg > 1:3154624/1‑61 (MQ=255) tACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAg > 1:4392056/1‑61 (MQ=255) aCAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGAccc < 1:1582794/70‑1 (MQ=255) gagTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGga < 1:2790775/71‑1 (MQ=255) agTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGAcc > 1:3607345/1‑65 (MQ=255) agTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGAcc > 1:500724/1‑65 (MQ=255) gtgGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGa < 1:4998281/70‑1 (MQ=255) gggCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAAc > 1:2246144/1‑71 (MQ=255) tATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACg < 1:1099357/67‑1 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAg > 1:930309/1‑42 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAg > 1:3078737/1‑42 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTa < 1:265076/45‑1 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTa < 1:4826649/45‑1 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTa < 1:2974816/45‑1 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTa < 1:3069223/45‑1 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTa < 1:2144831/45‑1 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATc < 1:2033952/70‑1 (MQ=255) agcaaagcaaGGAACAAAGAACGTCTATTATTATAGTCAg > 1:5129627/1‑40 (MQ=255) agcaaagcaaGGAACAAAGAACGTCTATTATTATAGTCAg > 1:329951/1‑40 (MQ=255) agcaaagcaaGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGAt > 1:1860628/1‑57 (MQ=255) agcaaagcaaGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGAt > 1:228747/1‑57 (MQ=255) agcaaagcaaGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACgat > 1:3233202/1‑63 (MQ=255) agcaaagcaaGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACgat > 1:2018026/1‑63 (MQ=255) caaagcaaGGAACAAAGAACGTCTATTATTATAGTCAg < 1:418194/38‑1 (MQ=255) gcaaGGAACAAAGAACGTCTATTATTATAGTCAGTTaa > 1:59228/1‑38 (MQ=255) gcaaGGAACAAAGAACGTCTATTATTATAGTCAGTTaa > 1:2529939/1‑38 (MQ=255) gcaaGGAACAAAGAACGTCTATTATTATAGTCAGTTaa > 1:4884259/1‑38 (MQ=255) aaGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGga < 1:3936509/46‑1 (MQ=255) aaGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGga < 1:3943331/46‑1 (MQ=255) aGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGc > 1:3087334/1‑71 (MQ=255) ggAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGcc > 1:2898740/1‑71 (MQ=255) aaaGAACGTCTATTATTATAGTCAGTTAACGACCCggg < 1:5499309/38‑1 (MQ=255) aaaGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGaaa > 1:2321233/1‑70 (MQ=255) aaaGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGaaa > 1:2247054/1‑70 (MQ=255) aaCGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATgg < 1:3641835/71‑1 (MQ=255) aCGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGaaa > 1:4270683/1‑41 (MQ=255) tCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATg > 1:4603936/1‑71 (MQ=255) ataGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCgg > 1:3816750/1‑70 (MQ=255) tAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGa > 1:3182209/1‑71 (MQ=255) tAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGa > 1:286313/1‑71 (MQ=255) | ATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGA > minE/412499‑412633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |