| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 453,565 | A→T | 21.9% | intergenic (+112/+38) | phr → / ← ybgH | deoxyribodipyrimidine photolyase, FAD‑binding/predicted transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 453,565 | 0 | A | T | 21.9% | 127.3 / 33.7 | 64 | intergenic (+112/+38) | phr/ybgH | deoxyribodipyrimidine photolyase, FAD‑binding/predicted transporter |
| Reads supporting (aligned to +/- strand): ref base A (23/26); new base T (5/9); total (29/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
CGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGA > minE/453499‑453634 | cGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGAcgcg > 1:569786/1‑71 (MQ=255) cTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCa < 1:5168356/71‑1 (MQ=255) cTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCa < 1:1470684/71‑1 (MQ=255) ttATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTc > 1:3248053/1‑69 (MQ=255) aTCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGc > 1:1796233/1‑71 (MQ=255) ccAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCaa > 1:4139378/1‑67 (MQ=255) tACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGc < 1:2398575/63‑1 (MQ=255) tACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCAt > 1:3518111/1‑70 (MQ=255) cAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATc < 1:3902978/69‑1 (MQ=255) ttGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGc > 1:3092361/1‑56 (MQ=255) cAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTg < 1:1882276/70‑1 (MQ=255) cAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTg < 1:469339/70‑1 (MQ=255) cAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGc > 1:3704886/1‑71 (MQ=255) ttCAATAAATTGCAGGAAATACGTAGGCCTGATAAGa > 1:2792399/1‑37 (MQ=255) ttCAATAAATTGCAGGAAATACGTAGGCCTGATAAGa > 1:1779094/1‑37 (MQ=255) ttCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCgg > 1:3490295/1‑64 (MQ=255) tCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCa > 1:2564631/1‑55 (MQ=255) tCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCa > 1:108133/1‑55 (MQ=255) cAATAAATTGCAGGAAATACGTAGGCCTGATAAGa > 1:2901243/1‑35 (MQ=255) cAATAAATTGCAGGAAATACGTAGGCCTGATAAGa > 1:2407228/1‑35 (MQ=255) tAAATTGCAGGAAATACGTAGGCCTGATAAGCCGCGTCAAg > 1:2380836/1‑41 (MQ=255) tAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAg > 1:2052126/1‑41 (MQ=255) tAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAg > 1:2242683/1‑41 (MQ=255) tAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAg > 1:5636674/1‑41 (MQ=255) tAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGc < 1:1023345/47‑1 (MQ=255) tAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGc < 1:1872565/47‑1 (MQ=255) tAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCAt < 1:5446975/49‑1 (MQ=255) tAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTAtt < 1:1772202/71‑1 (MQ=255) aaaTTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCg > 1:5413041/1‑57 (MQ=255) aaTTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGc > 1:1411317/1‑45 (MQ=255) aTTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGc < 1:1704320/44‑1 (MQ=255) aTTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTaa < 1:1819958/70‑1 (MQ=255) ttGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTaaa > 1:4168872/1‑69 (MQ=255) ttGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTaa > 1:3083005/1‑69 (MQ=255) tGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATc > 1:3792552/1‑45 (MQ=255) tGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATc > 1:1146138/1‑45 (MQ=255) cAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTc < 1:4068127/71‑1 (MQ=255) aGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTcc < 1:3233539/71‑1 (MQ=255) aaaTACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTccagc > 1:4814873/1‑71 (MQ=255) ccccgtaGGCCTGATAAGTCGCGTC‑AGCGgcgcatcaggcatcggttgtcggatgcgacgctatgcgtctt < 1:5162831‑M1/68‑43 (MQ=255) ccccgtaGGCCTGATAAGTCGCGTC‑AGCGgcgcatcaggcatcggttgtcggatgcgacgctatgcgtct > 1:5376657‑M1/4‑29 (MQ=255) ccccgtaGGCCTGATAAGTCGCGTC‑AGCGgcgcatcaggcatcggttgtcggatgcgacgctatgcgtct > 1:354102‑M1/4‑29 (MQ=255) aTACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTccagcgc > 1:2764064/1‑71 (MQ=255) aTACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTccagcgc < 1:1415049/71‑1 (MQ=255) cccgtAGGCCTGATAAGTCGCGTC‑AGCGgcgcatcaggcatcggttgtcggatgcgacgctatgcgtctta < 1:701243‑M1/69‑44 (MQ=255) cGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTccagcgccag < 1:4830765/71‑1 (MQ=255) cGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTccagcgcca < 1:297224/70‑1 (MQ=255) gTAGGCCTGATAAGTCGCGTC‑AGCGgcgcatcaggcatcggttgtcggatgcgacgctatgcgtcttatcc < 1:3553236‑M1/71‑47 (MQ=255) gTAGGCCTGATAAGTCGCGTC‑AGCGgcgcatcaggcatcggttgtcggatgcgacgctatgcgtcttatcc < 1:3546526‑M1/71‑47 (MQ=255) gTAGGCCTGATAAGTCGCGTC‑AGCGgcgcatcaggcatcggttgtcggatgcgacgctatgcgtcttatcc < 1:845347‑M1/71‑47 (MQ=255) gTAGGCCTGATAAGTCACGTC‑AGCGgcgcatcaggcatcggttgtc > 1:887445‑M1/1‑25 (MQ=255) tAGGCCTGATAAGTCGCGTC‑AGCGgcgcatcaggcatcggttgtcggatgcgacgctatgcgtcttatcc > 1:4465251‑M1/1‑24 (MQ=255) tAGGCCTGATAAGTCGCGTC‑AGCGgcgcatcaggcatcggttgtcggatgcgacgctatgcgtcttatcc > 1:4976579‑M1/1‑24 (MQ=255) gCCTGATAAGTCGCGTC‑AGCGgcgcatcaggcatcggttgtcggatgcgacgc < 1:987004‑M1/53‑33 (MQ=255) gCCTGATAAGTCGCGTC‑AGCGgcgcatcaggcatcggttgtcggatgcgacgc < 1:553258‑M1/53‑33 (MQ=255) tGATAAGTCGCGTC‑AGCGgcgcatcaggcatcggttgtcggatgcgacgc < 1:3753859‑M1/50‑33 (MQ=255) tGATAAGTCGCGTC‑AGCGgcgcatcaggcatcggttgtcggatgcgacgc < 1:906803‑M1/50‑33 (MQ=255) tGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTaa < 1:2366748/49‑1 (MQ=255) tGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTaa < 1:3030704/49‑1 (MQ=255) gATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTcca < 1:1787791/55‑1 (MQ=255) gATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTcca < 1:2447993/55‑1 (MQ=255) aTAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGc < 1:3682591/36‑1 (MQ=255) aTAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGtt > 1:1308465/1‑70 (MQ=255) aTAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGtt < 1:3756168/70‑1 (MQ=255) aTAAGACGCGT‑AAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGtt < 1:835991/69‑1 (MQ=255) aaGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTccag > 1:5120385/1‑53 (MQ=255) aGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTg < 1:941609/71‑1 (MQ=255) gACGCGTCAAGCGTCGCATCAGGCATAGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGa < 1:5637452/71‑1 (MQ=255) | CGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGA > minE/453499‑453634 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |