| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 477,244 | T→A | 13.1% | intergenic (+178/‑669) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 477,244 | 0 | T | A | 13.1% | 174.6 / 14.6 | 68 | intergenic (+178/‑669) | mngB/cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| Reads supporting (aligned to +/- strand): ref base T (26/33); new base A (5/4); total (31/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAATTCAATATATTGCAGAGATGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTATTTTTAACAAAATAATAACCCTGGGTGAGTTAATTAT > minE/477174‑477311 | aaaTTCAATATATTGCAGAGATGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCt > 1:4970543/1‑71 (MQ=255)aaaTTCAATATATTGCAGAGATGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCt > 1:3506618/1‑71 (MQ=255) aaTTCAATATATTGCAGAGATGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCtt < 1:3378909/71‑1 (MQ=255) aaTTCAATATATTGCAGAGATGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCtt < 1:5331296/71‑1 (MQ=255) ttCAATATATTGCAGAGATGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTc > 1:4164460/1‑70 (MQ=255) tcaatacattgcatgggccatgtaggcctgataagcgtagcgcatcaggcaattttacctttgtcatcagt < 1:2818381‑M1/8‑3 (MQ=255) tcaatacattgcatgggccatgtaggcctgataagcgtagcgcatcaggcaattttacctttgtcatcagt < 1:2292355‑M1/8‑3 (MQ=255) aaTATATTGCAGAGATGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCAc < 1:2832282/69‑1 (MQ=255) tatatTGCAGAGATGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCActct > 1:19652/1‑70 (MQ=255) tatatTGCAGAGATGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACtctc < 1:2729503/71‑1 (MQ=255) tatatTGCAGAGATGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACtctc < 1:5477406/71‑1 (MQ=255) atTGCAGAGATGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAg > 1:3436746/1‑71 (MQ=255) ttgcatgggccatgtaggcctgataagcgtagcgcatcaggcaattttacctttgtcatcagtc > 1:3005596‑M1/56‑61 (MQ=255) tGCAGAGATGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCtt < 1:307619/59‑1 (MQ=255) tGCAGAGATGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCa > 1:1395606/1‑61 (MQ=255) tgcatgggccatgtaggcctgataagcgtagcgcatcaggcaattttacctttgTCATCAGTCTCAAgccg < 1:4894872‑M1/17‑2 (MQ=255) gcatgggccatgtaggcctgataagcgtagcgcatcaggcaattttacctttgTCATCAGTCTCAagccgc < 1:4351900‑M1/18‑3 (MQ=255) gcatgggccatgtaggcctgataagcgtagcgcatcaggcaattttacctttgTCATCAGTCTCAagccgc < 1:2736229‑M1/18‑3 (MQ=255) gcatgggccatgtaggcctgataagcgtagcgcatcaggcaattttacctttgTCATCAGTCTCAagccgc < 1:3883591‑M1/18‑3 (MQ=255) gagaTGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCaa > 1:2066866/1‑64 (MQ=255) gagaTGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCaa > 1:4870258/1‑64 (MQ=255) agaTGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGta < 1:1778325/71‑1 (MQ=255) agaTGATGTAGACACTGGCAAGCGTAGCGCATAAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGta > 1:1263320/1‑71 (MQ=255) gatgatGTAGACACTGGCAAGCGTAGCTCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGta < 1:5219710/70‑1 (MQ=255) gatgatGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCa > 1:4457804/1‑55 (MQ=255) gatgatGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCa > 1:1993313/1‑55 (MQ=255) atgTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATAtgt > 1:1575023/1‑71 (MQ=255) atgTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATAtgt < 1:570277/71‑1 (MQ=255) atgTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATAtgt < 1:1643478/71‑1 (MQ=255) tAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTatat < 1:5336468/66‑1 (MQ=255) taggcctgataagcgtagcgcatcaggcaattttacctttgTCATCAGTCTCaagccgcg > 1:2086626‑M1/42‑57 (MQ=255) gACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGCtt > 1:3663150/1‑71 (MQ=255) gACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGCtt > 1:1953073/1‑71 (MQ=255) acacTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACATACACGTGGCtt < 1:2439347/70‑1 (MQ=25) acTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGtata > 1:4348652/1‑60 (MQ=255) acTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTAt > 1:3919259/1‑71 (MQ=255) cTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCtt < 1:354228/40‑1 (MQ=255) cTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCtt < 1:1584333/40‑1 (MQ=255) cTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACtctc < 1:2436253/47‑1 (MQ=255) cTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACtctc < 1:5334242/47‑1 (MQ=255) cTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTAtt > 1:1714366/1‑71 (MQ=255) tgataagcgtagcgcatcaggcaattttacctttgTCATCAGTCTCAagccgc > 1:4223045‑M1/36‑51 (MQ=255) tgataagcgtagcgcatcaggcaattttacctttgTCATCAGTCTCAagccgc > 1:5023272‑M1/36‑51 (MQ=255) tgataagcgtagcgcatcaggcaattttacctttgTCATCAGTCTCAagccgc > 1:2247114‑M1/36‑51 (MQ=255) tgataagcgtagcgcatcaggcaattttacctttgTCATCAGTCTCAagccgc > 1:3714582‑M1/36‑51 (MQ=255) ggCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTAtttt > 1:854474/1‑71 (MQ=255) ggCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTAttt > 1:3603881/1‑70 (MQ=255) gCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCActct < 1:5147042/43‑1 (MQ=255) gCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCActct < 1:4176340/43‑1 (MQ=255) cAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTAtttt < 1:3464564/69‑1 (MQ=255) aGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGta < 1:5022141/51‑1 (MQ=255) aGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGta < 1:2671208/51‑1 (MQ=255) cGTAGCGCATCATGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGtat > 1:4457864/1‑50 (MQ=255) cGTAGCGCATCAGGTAATTTTGCTTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTATTTTTAACaa < 1:5094143/71‑1 (MQ=255) cGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTATTTTTAACaa < 1:948178/71‑1 (MQ=255) gcgcATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCa > 1:2508926/1‑41 (MQ=255) gagcATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCa > 1:2831984/3‑41 (MQ=255) gcATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACATATACGTgg > 1:1031412/1‑50 (MQ=38) aGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTATTTTTAACAAAATAATAAccc < 1:3482073/71‑1 (MQ=255) ggTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTATTTTTAACAAAATAATAACCCt < 1:5551177/71‑1 (MQ=255) ggTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTATTTTTAACAAAATAATAACCCt < 1:1673090/71‑1 (MQ=255) gTAATTTTGCGTTTATCTTCACTCTCAAGCCACGt < 1:1164678/35‑1 (MQ=255) gTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTgg < 1:919856/43‑1 (MQ=255) gTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTgg < 1:3381039/43‑1 (MQ=255) gTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTgg < 1:4398554/43‑1 (MQ=255) tAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTATTTTTAACAAAATAATAACCCTg < 1:1161026/70‑1 (MQ=255) aaTTTTGCGTTTATCTTCACTCTCAAGCCACGTatat > 1:4845500/1‑37 (MQ=255) aaTTTTGCGTTTATCTTCACTCTCAAGCCACGTatat > 1:2689727/1‑37 (MQ=255) ttttGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGc < 1:1206574/40‑1 (MQ=255) ttttGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTAttttt < 1:4490166/49‑1 (MQ=255) cGTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTATTTTTAACAAAATAATAACCCTGGGTGAGTTa < 1:1595869/71‑1 (MQ=255) gTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTa < 1:3191139/38‑1 (MQ=255) gTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTAtt < 1:5643857/40‑1 (MQ=255) tttATCTTCACTCTCAAGCCACGTATATGTGGCTTTATTTTTAACAAaataa < 1:2106858/52‑1 (MQ=255) tttATCTTCACTCTCAAGCCACGTATATGTGGCTTTATTTTTAACAAaat < 1:3310780/50‑1 (MQ=255) ttATCTTCACTCTCAAGCCACGTATATGTGGCTTTAtttt > 1:1753974/1‑40 (MQ=255) ttATCTTCACTCTCAAGCCACGTATATGTGGCTTTATTTTTAACAAAATAATAACCCTGGGTGAGTTAAt > 1:3210392/1‑70 (MQ=255) tCTTCACTCTCAAGCCACGTATATGTGGCTTTATTTTTAACAAAATAATAACCCTGGGTGAGTTAATtat > 1:2150869/1‑70 (MQ=255) | AAATTCAATATATTGCAGAGATGATGTAGACACTGGCAAGCGTAGCGCATCAGGTAATTTTGCGTTTATCTTCACTCTCAAGCCACGTATATGTGGCTTTATTTTTAACAAAATAATAACCCTGGGTGAGTTAATTAT > minE/477174‑477311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |