| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 189,235 | T→C | 13.1% | C244C (TGT→TGC) | ldcC → | lysine decarboxylase 2, constitutive |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 189,235 | 0 | T | C | 13.1% | 186.3 / 17.0 | 76 | C244C (TGT→TGC) | ldcC | lysine decarboxylase 2, constitutive |
| Reads supporting (aligned to +/- strand): ref base T (37/29); new base C (5/5); total (42/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGAAACCGACGCGTAAT > minE/189167‑189304 | aCGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGt < 1:3666901/69‑1 (MQ=255) cGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCa > 1:1151564/1‑70 (MQ=255) gcGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCaca > 1:5164249/2‑68 (MQ=255) gcGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCaca > 1:352896/2‑68 (MQ=255) gcGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCaca > 1:1889760/2‑68 (MQ=255) cGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCaca < 1:5103456/69‑3 (MQ=255) cGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCaca < 1:4449368/69‑3 (MQ=255) cGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCACaaa > 1:5292984/1‑71 (MQ=255) cGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCACaaa < 1:5229770/71‑1 (MQ=255) cGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCACaaa < 1:3650730/71‑1 (MQ=255) cGAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCACaa < 1:4096418/70‑1 (MQ=255) gAACAAAATTGTTGGTATGTACTCTGCTCCAGCAGGCAGCACCATTCTGATTGACCGTAACTGCCACAAAt > 1:1707822/1‑71 (MQ=255) aaCAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATc > 1:2954425/1‑71 (MQ=255) aaCAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATc > 1:2947894/1‑71 (MQ=255) aaaaTTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCt > 1:1921515/1‑71 (MQ=255) ggTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATc < 1:3370142/70‑1 (MQ=255) tGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGtt > 1:4453286/1‑70 (MQ=255) tGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGtt < 1:5654539/70‑1 (MQ=255) tACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTtgat < 1:1870605/71‑1 (MQ=255) tACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTtgat > 1:1613896/1‑71 (MQ=255) aCGCCGCGCCATCCGGCAGTACGCTGTTGATCGCCCGCAATTGTCATAAATCGCTGGCGCATCTGTtgat > 1:2760333/1‑70 (MQ=255) aCGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTtgat > 1:3583222/1‑70 (MQ=255) aCGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTtgat > 1:1351555/1‑70 (MQ=255) ccgcGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTtgatgatg < 1:4945377/71‑1 (MQ=255) ccgcGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTtgatgatg < 1:3983363/71‑1 (MQ=255) gcgcCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGaa < 1:2884894/71‑1 (MQ=255) gcCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACg < 1:2288394/71‑1 (MQ=255) ccATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGtt < 1:3991621/59‑1 (MQ=255) cATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCt < 1:5024508/46‑1 (MQ=255) aTCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCt < 1:527585/45‑1 (MQ=255) aTCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATg < 1:1049915/71‑1 (MQ=255) ccGGCAGTACGCTGTTGATCGACAGCAATTGTCATAAATCGCTGGCGCATCTGTtgatga > 1:2177709/1‑60 (MQ=255) cGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTg < 1:5021617/52‑1 (MQ=255) cGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTg < 1:3599219/52‑1 (MQ=255) cGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAg > 1:5588338/1‑71 (MQ=255) cGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAg > 1:5399001/1‑71 (MQ=255) tACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATg < 1:1808091/62‑1 (MQ=255) cGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTtga > 1:5007452/1‑48 (MQ=255) cGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGaa > 1:3139457/1‑55 (MQ=255) cGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGaa > 1:3491300/1‑55 (MQ=255) gCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGt < 1:1038144/44‑1 (MQ=255) gCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGt < 1:5599218/44‑1 (MQ=255) gCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGt < 1:3453335/44‑1 (MQ=255) cTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCAt > 1:2609161/1‑39 (MQ=255) cTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCAt > 1:1271903/1‑39 (MQ=255) cTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCAt > 1:1345438/1‑39 (MQ=255) cTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCAt > 1:2523216/1‑39 (MQ=255) tGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTg > 1:3036730/1‑41 (MQ=255) tGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTa > 1:2201923/1‑56 (MQ=255) tGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTa > 1:2195403/1‑56 (MQ=255) gATCGACCGCAATTGTCATAAATCGCTGGCGCATCTg > 1:4825191/1‑37 (MQ=255) gATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGc > 1:3516663/1‑68 (MQ=255) gATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCt > 1:3522943/1‑69 (MQ=255) aTCGACCGCAATTGTCATAAATCGCTGGCGCATCTGtt < 1:183870/38‑1 (MQ=255) cGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTa > 1:3095707/1‑52 (MQ=255) cGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTa > 1:5431075/1‑52 (MQ=255) gACCGCAATTGTCATAAATCGCTGGCGCATCTGTtgat < 1:5426214/38‑1 (MQ=255) aCCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGAAAcc > 1:257068/1‑70 (MQ=255) ccGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGAAACCGa < 1:5133824/71‑1 (MQ=255) cGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGaaa > 1:4692703/1‑66 (MQ=255) cGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGaaa > 1:36628/1‑66 (MQ=255) cGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGaaa > 1:1326380/1‑66 (MQ=255) cGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGaaa > 1:1307454/1‑66 (MQ=255) gCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATg < 1:1652731/45‑1 (MQ=255) cAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGAAACCGAc > 1:3116045/1‑69 (MQ=255) aTTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAg > 1:17260/1‑51 (MQ=255) aTTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGAAACCGACGCGt < 1:5009704/71‑1 (MQ=255) aTTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGAAACCGACGCGt < 1:3645658/71‑1 (MQ=255) ttGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGc < 1:5454214/47‑1 (MQ=255) ttGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGc < 1:3007459/47‑1 (MQ=255) ttGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAg < 1:3962762/50‑1 (MQ=255) ttGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGaa < 1:3446543/60‑1 (MQ=255) ttGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGaa < 1:4102785/60‑1 (MQ=255) ttGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGaa < 1:4017861/60‑1 (MQ=255) tGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTgg > 1:5420977/1‑54 (MQ=255) gTCATAAATCGCTGGCGCATCTGTTGATGATGAACGa > 1:5080565/1‑37 (MQ=255) gTCATAAATCGCTGGCGCATCTGTTGATGATGAACGa > 1:378126/1‑37 (MQ=255) tCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGAAACCGACGCGt < 1:2684987/67‑1 (MQ=255) tCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGAAACCGACGCGTAAt < 1:2405376/70‑1 (MQ=255) | ACGTCGAACAAAATTGTGGGTATGTACGCCGCGCCATCCGGCAGTACGCTGTTGATCGACCGCAATTGTCATAAATCGCTGGCGCATCTGTTGATGATGAACGATGTAGTGCCAGTCTGGCTGAAACCGACGCGTAAT > minE/189167‑189304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |