| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 189,508 | G→T | 11.3% | P335P (CCG→CCT) | ldcC → | lysine decarboxylase 2, constitutive |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 189,508 | 0 | G | T | 11.3% | 162.1 / 5.4 | 53 | P335P (CCG→CCT) | ldcC | lysine decarboxylase 2, constitutive |
| Reads supporting (aligned to +/- strand): ref base G (18/29); new base T (2/4); total (20/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01 | |||||||||||
CTACAACACCGACTGGATCAAACAGACGCTGGATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTAAAAGTGGTATGAGCGGCGAGCGTGTTG > minE/189439‑189566 | ctACAACACCGACTGGATCAAACAGCCGCTGGATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCg > 1:2405386/1‑70 (MQ=255) caacaCCGACTTCATCAAGAAAACACTGGATGTGAAATCCATCCACTTTGACTCCGCGTGGGTGCCTTaca > 1:19933/1‑71 (MQ=255) caacaCCGACTTCATCAAGAAAACACTGGATGTGAAATCCATCCACTTTGACTCCGCGTGGGTGCCTTaca > 1:2258878/1‑71 (MQ=255) caacaCCGACTGGATCAAACAGACGCTGGATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTaca > 1:485429/1‑71 (MQ=255) aacaCCGACTGGATCAAACAGACGCTGGATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTacac > 1:2438796/1‑71 (MQ=255) cacCGACTGGACCAAACAGACGCTGGATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACAccc < 1:5215005/71‑1 (MQ=255) acCGTCTGGATCAAAGAGACGCTGGATGTCCCGTCGATTGACTTCGATTGTGCCTGGGTGCCGTACACCCa < 1:5465383/71‑1 (MQ=255) cGACTGGATCAAACAGACGCTGGATGTCCCGTCGATTCACTTAGATTCTGCCTGGGTGCCGTACACCCA‑tt > 1:7307/1‑71 (MQ=255) cAAACAGACGCTGGATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGa > 1:3387964/1‑71 (MQ=255) aCAGACGCTGGATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTacac > 1:2049515/1‑54 (MQ=255) aCAGACGCTGGATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTaca > 1:4164848/1‑53 (MQ=255) cAGACGCTGGATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTa < 1:3199739/71‑1 (MQ=255) cAGACGCTGGATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTa > 1:1274597/1‑71 (MQ=255) aCGCTGGATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGAt > 1:4213022/1‑65 (MQ=255) cGCTGGATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCa < 1:1872445/70‑1 (MQ=255) cGCTGGATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAg > 1:317984/1‑71 (MQ=255) gATGTCCCGTCGATTCACTTTGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTaa < 1:5687877/71‑1 (MQ=255) gATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCTATCTACCAGGGTaa < 1:5057101/71‑1 (MQ=255) gATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCTATCTACCAGGGTaa < 1:3289155/71‑1 (MQ=255) gATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTaa < 1:4871286/71‑1 (MQ=255) tGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTaaaa < 1:862260/71‑1 (MQ=255) tCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTAAAAg < 1:1131259/70‑1 (MQ=255) cGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCa < 1:684431/58‑1 (MQ=255) cGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCa < 1:4289751/58‑1 (MQ=255) cGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCa < 1:4283153/58‑1 (MQ=255) tCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTAcc < 1:4846197/55‑1 (MQ=255) tCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTAcc < 1:1856686/55‑1 (MQ=255) tCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTAcc < 1:359900/55‑1 (MQ=255) gATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTAAAAGTGGTa > 1:4615643/1‑68 (MQ=255) gATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTAAAAGTGGTAt > 1:2351111/1‑69 (MQ=255) gATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTAAAAGTGGTAt > 1:792084/1‑69 (MQ=255) gATTCACTTCGATTCTGCCTAGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTAAAAGTGGTATGa < 1:4226539/71‑1 (MQ=255) tCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTAAAAGTGGTATGAgcg > 1:2957342/1‑71 (MQ=255) cACTTTGACTCCGCGTTGGTGCCTTACACCAACTTCTCA‑CCGATTTACGAAGGTAAATGCGGTATGAgcg < 1:2040140/70‑1 (MQ=255) cACTTTGACTCCGCGTGGGTGCCTTACACCAACTTCTCA‑CCGATTTACGAAGGTAAATGCGGTATGAgcgg < 1:609115/71‑1 (MQ=255) aCTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTaa < 1:1966890/55‑1 (MQ=255) aCTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTaa < 1:5018399/55‑1 (MQ=255) cTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTAc < 1:3561015/46‑1 (MQ=255) cGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGAt > 1:3369274/1‑39 (MQ=255) cGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGAt > 1:2358286/1‑39 (MQ=255) cGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCa < 1:2805639/45‑1 (MQ=255) cGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAgg > 1:4457879/1‑47 (MQ=255) cGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAgg > 1:5009936/1‑47 (MQ=255) cGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAg > 1:4993203/1‑46 (MQ=255) gATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTAAAAGTGGTATGAGCGGCGAGCg < 1:5686929/71‑1 (MQ=255) ccTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTAAAAGTGGTATGAGCGGCGAGCGTGTTg < 1:4371691/69‑1 (MQ=255) ggTGCGGTACACCCA‑TTTTCATCCGATCTACCAGGGTAAAAGTgg < 1:3907938/45‑1 (MQ=255) ggTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTAAAAGTgg < 1:4903872/45‑1 (MQ=255) gTGCCTTACACCAACTTCTCA‑CCGATTTACGAAGGTAAATGCGGTATGAGCGGTGGCCgtgt < 1:1284978/62‑1 (MQ=255) gTGCCTTACACCAACTTCTCA‑CCGATTTACGAAGGTAAATGCGGTATGAGCGGTGGCCgtgt < 1:3328815/62‑1 (MQ=255) gTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTAAAAGTGGt < 1:2329540/45‑1 (MQ=255) gTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTAAAAGTGGt < 1:4528008/45‑1 (MQ=255) tGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTaa < 1:29654/37‑1 (MQ=255) ccGTACACCCA‑TTTTCATCCGATCTACCAGGGTAAAAGTgg < 1:2079447/41‑1 (MQ=255) gTACACCCA‑TTTTCATCCGATCTACCAGGGTaaaa > 1:4486317/1‑35 (MQ=255) | CTACAACACCGACTGGATCAAACAGACGCTGGATGTCCCGTCGATTCACTTCGATTCTGCCTGGGTGCCGTACACCCA‑TTTTCATCCGATCTACCAGGGTAAAAGTGGTATGAGCGGCGAGCGTGTTG > minE/189439‑189566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |