| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 834,197 | C→T | 21.0% | H885H (CAC→CAT) ‡ | narG → | nitrate reductase 1, alpha subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 834,197 | 0 | C | T | 21.0% | 109.4 / 23.5 | 57 | H885H (CAC→CAT) ‡ | narG | nitrate reductase 1, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base C (21/24); new base T (6/6); total (27/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.91e-01 | |||||||||||
CAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATG > minE/834129‑834263 | cAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACAt < 1:4363823/71‑1 (MQ=255)cAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACAt < 1:2022595/71‑1 (MQ=255) aGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACAt > 1:160659/1‑70 (MQ=255) cGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCCACCTGATCCCAGGTAAAACCGCGCCACACATTa > 1:4560834/1‑69 (MQ=255) gCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATgg > 1:1512062/1‑71 (MQ=255) gATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCg > 1:1450425/1‑70 (MQ=255) gtgAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTag < 1:3745983/70‑1 (MQ=255) gtgAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTag < 1:4649663/70‑1 (MQ=255) gAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTAt < 1:5623542/60‑1 (MQ=255) gAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTAt < 1:3166538/60‑1 (MQ=255) gAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTAt < 1:3295580/60‑1 (MQ=255) aaaGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAgcg > 1:2738305/1‑71 (MQ=255) aaGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAgcgc < 1:242395/71‑1 (MQ=255) aGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAgcgc > 1:5349412/1‑70 (MQ=255) tGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTa > 1:2027666/1‑71 (MQ=255) gcaaaGGCGAATGCGATCTGATTCCAGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTAccct > 1:2952907/3‑70 (MQ=255) aaaaGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCgg > 1:220715/1‑71 (MQ=255) aaaGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTag < 1:4668124/55‑1 (MQ=255) aaaGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTag < 1:3944940/55‑1 (MQ=255) aaGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTAt < 1:5422594/65‑1 (MQ=255) aGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTagag > 1:3313046/1‑55 (MQ=255) aGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTagag > 1:4913471/1‑55 (MQ=255) aGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTagag > 1:298110/1‑55 (MQ=255) aGGCGACTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTaga > 1:739382/1‑54 (MQ=255) ggCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGa > 1:1320910/1‑70 (MQ=255) gCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACt < 1:2308008/71‑1 (MQ=255) gCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACt < 1:2612768/71‑1 (MQ=255) aGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTAc < 1:4876532/71‑1 (MQ=255) aGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTAc < 1:1073281/71‑1 (MQ=255) gTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTa > 1:5092015/1‑69 (MQ=255) gTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTAc > 1:1805810/1‑70 (MQ=255) atcTGATTCCAGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAAc < 1:1171900/67‑1 (MQ=255) atcTGATTCCAGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAAc < 1:1531459/67‑1 (MQ=255) atcTGATTCCAGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAAc < 1:1759713/67‑1 (MQ=255) tGATCCCAGGTAAAACCGCGCCACACATTATGGTc < 1:2240234/35‑1 (MQ=255) tGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATcc < 1:230778/52‑1 (MQ=255) tGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAAc < 1:3983531/66‑1 (MQ=255) aTCCCAGGTAAAACCGCGCCACACATTATGGTCGTag < 1:5539480/37‑1 (MQ=255) aTCCCAGGTAAAACCGCGCCACACATTATGGTCGTATAGCGCGATTATCCGGCGACTTACGAACGCtt < 1:1439717/68‑1 (MQ=255) aTCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCtt < 1:1762731/68‑1 (MQ=255) aTCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTAc > 1:3137129/1‑71 (MQ=255) aTCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTAc > 1:1664951/1‑71 (MQ=255) cAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACctct < 1:2961830/71‑1 (MQ=255) cAGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTacc > 1:3652708/1‑43 (MQ=255) aGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTa > 1:4131261/1‑71 (MQ=255) aGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAACGc < 1:2274748/61‑1 (MQ=255) aGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAACGCTTTACctcgc < 1:1793489/71‑3 (MQ=255) ggTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGaa > 1:4401786/1‑57 (MQ=255) gTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCttt < 1:3205612/62‑1 (MQ=255) aaaaCCTCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAACGCTTTACCTCGCTCgg > 1:3373877/1‑71 (MQ=255) aaaaCCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAACGCTTTACCTCGCTCgg > 1:2028724/1‑71 (MQ=255) aaaaCCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAACGCTTTACCTCGCTCgg < 1:537943/71‑1 (MQ=255) aaaaCCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAACGCTTTACCTCGCTCgg > 1:4059875/1‑71 (MQ=255) aaaaCCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAACGCTTTACCTCGCTCgg > 1:3264816/1‑71 (MQ=255) gcgcCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTAc > 1:2682170/1‑56 (MQ=255) gcgcCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTAc > 1:2475642/1‑56 (MQ=255) gcgcCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCt < 1:151129/71‑1 (MQ=255) cacacaTTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTAc > 1:1043999/1‑52 (MQ=255) cacaTTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACctc < 1:5323215/53‑1 (MQ=255) acaTTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACctct < 1:38355/53‑1 (MQ=255) acaTTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATg > 1:2989700/1‑68 (MQ=255) caTTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTa > 1:3775983/1‑53 (MQ=255) | CAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTATCGGCCCGCTGATG > minE/834129‑834263 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |