BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	436259 =	70 (0.950)	342 (5.090)	62/88	NT	87.6%	intergenic (‑156/‑29)	ybfF/seqA	conserved hypothetical protein/regulatory protein for replication initiation
*	?	minE	= 2706018	33 (0.490)	342 (5.090)	62/88	NT	87.6%	coding (836/837 nt)	dam	DNA adenine methylase

Only 100 of 467 total aligned reads displayed.

GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/436331‑436259

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC  <  minE/2706018‑2705949

 CAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAA                                                                         <  1:2147759/71‑1

 CAATATAGCTGTAGAGTTCATCATCAACTTCAATCG‑TTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT                                                                        >  1:5091787/1‑71

      TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATT                                                                    >  1:2930791/1‑71

        GCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT                                                                  <  1:3968946/71‑1

        GCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT                                                                  <  1:2452293/71‑1

         CTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTT                                                                 <  1:3494478/71‑1

         CTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTT                                                                 <  1:679631/71‑1

         CTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTT                                                                 <  1:3633006/71‑1

            TAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCG                                                              <  1:2538324/71‑1

            TAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG                                                                           <  1:1266750/58‑1

            TAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG                                                                           <  1:4854712/58‑1

              GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCG                                                            <  1:4331449/71‑1

               AGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGG                                                           <  1:2831955/71‑1

               AGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG                                                                           <  1:86686/55‑1

               AGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG                                                                           <  1:3260507/55‑1

                 TTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGT                                                         <  1:4231428/71‑1

                 TTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCG                                                              <  1:2338228/66‑1

                  TCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTT                                                                 <  1:4899356/62‑1

                    ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAA                                                      <  1:1928954/71‑1

                    ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAA                                                      <  1:4618781/71‑1

                    ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA                                                       <  1:1207146/70‑1

                    ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA                                                       <  1:4492107/70‑1

                    ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGG                                                          >  1:1534204/1‑67

                     TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGT                                                         <  1:2799717/67‑1

                     TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGG                                                           <  1:4164239/65‑1

                       ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    <  1:1593527/70‑1

                       ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    <  1:4789353/70‑1

                       ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    <  1:1413563/70‑1

                       ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    <  1:1328253/70‑1

                       ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTC                                                               >  1:885158/1‑59

                       ATCAACTTCAATCGTTTTCATCATAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    >  1:2066361/1‑70

                        TCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGA                                                  <  1:2367492/71‑1

                        TCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    <  1:505365/69‑1

                        TCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC                                                             <  1:1079658/60‑1

                         CAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGAC                                                 >  1:5118842/1‑71

                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGA                                                  >  1:4148008/1‑69

                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT                                                                        <  1:2419772/47‑1

                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT                                                                        <  1:4755219/47‑1

                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT                                                                        <  1:231453/47‑1

                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT                                                                        <  1:499110/47‑1

                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT                                                                        <  1:1684580/47‑1

                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT                                                                        <  1:1496587/47‑1

                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT                                                                        <  1:4374650/47‑1

                           ACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTTTTAGCTGAAT                                                                        <  1:1873017/46‑1

                            CTTCAATCGTTTTCATCTTAATCGAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA                                                       <  1:2709435/62‑1

                            CTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA                                                       <  1:2619507/62‑1

                              TCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAA                                                     >  1:694417/1‑62

                                  TCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTT                                        <  1:2973191/71‑1

                                    GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTG                                       <  1:961547/70‑1

                                    GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTG                                       <  1:605369/70‑1

                                    GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTG                                       >  1:4540370/1‑70

                                    GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTG                                       >  1:4681294/1‑70

                                    GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTG                                       <  1:3898638/70‑1

                                    GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGA                                                  <  1:3196075/59‑1

                                     TTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA                                     <  1:5175607/71‑1

                                      TTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATT                                                                    <  1:3698679/39‑1

                                      TTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATT                                                                    <  1:2216426/39‑1

                                       TTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG                                                        >  1:4292908/1‑50

                                       TTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG                                                        >  1:3831018/1‑50

                                       TTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG                                                        >  1:2585703/1‑50

                                       TTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG                                                        >  1:536563/1‑50

                                        TCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT                                                                  >  1:2245335/1‑39

                                           TCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC                               >  1:1824096/1‑71

                                             TTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC                               >  1:4030901/1‑69

                                             TTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC                               >  1:2860041/1‑69

                                             TTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTT                                                                 >  1:1994345/1‑35

                                              TAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAG                            >  1:2401018/1‑71

                                                ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGTCAGC                           <  1:1002444/70‑1

                                                ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC                           <  1:557751/70‑1

                                                ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC                           <  1:1051376/70‑1

                                                ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC                           <  1:30640/70‑1

                                                ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC                           <  1:3801424/70‑1

                                                  CCAGTGGAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA                                                       <  1:3454876/40‑1

                                                  CCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    <  1:1696114/43‑1

                                                   CAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTT                       <  1:735615/71‑1

                                                   CAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTT                       >  1:4127984/1‑71

                                                   CAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTT                       >  1:2477462/1‑71

                                                   CAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT                        <  1:4951089/70‑1

                                                   CAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT                        <  1:2668908/70‑1

                                                   CAGTGCAGTGTCTTAGCTGAATTATTTTTTAGCGGGTGAAACGA                                                  >  1:646346/1‑44

                                                     GTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTC                      <  1:4400055/70‑1

                                                      TGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGT                    <  1:4262648/71‑1

                                                      TGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA                                                       <  1:3366682/36‑1

                                                       GCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC                           >  1:1770632/1‑63

                                                       GCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    <  1:3131249/38‑1

                                                        CAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCC                  <  1:3658917/71‑1

                                                          GTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCAC                >  1:1461247/1‑71

                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT             >  1:5072304/1‑71

                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT             >  1:2771454/1‑71

                                                               TTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT           >  1:4097675/1‑71

                                                               TTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT           >  1:4588314/1‑71

                                                               TTAGCTGAATTATTTTTTCGCGGGTGAAACGACTC                                               >  1:781554/1‑35

                                                                 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTT            >  1:138722/1‑68

                                                                  GCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCA                             >  1:3560291/1‑50

                                                                   CTGATTTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTAC        <  1:3929312/70‑1

                                                                   CTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG       <  1:3306020/71‑1

                                                                   CTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG       <  1:4455737/71‑1

                                                                     GAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTG     >  1:3215113/1‑71

                                                                     GAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTG     >  1:3886524/1‑71

                                                                     GAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA                                     >  1:831008/1‑39

GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/436331‑436259

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC  <  minE/2706018‑2705949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.