| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,595,749 | G→A | 6.8% | V283V (GTC→GTT) | arsB ← | arsenite/antimonite transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,595,749 | 0 | G | A | 6.8% | 413.5 / 13.6 | 132 | V283V (GTC→GTT) | arsB | arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base G (59/64); new base A (6/3); total (65/67) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 135 total aligned reads displayed.
AAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACA > minE/2595683‑2595818 | aaGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACaa < 1:423141/71‑1 (MQ=255)aaGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACaa < 1:4489240/71‑1 (MQ=255)aaGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACaa < 1:4456247/71‑1 (MQ=255) aGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt < 1:1029546/71‑1 (MQ=255) tatTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTg > 1:2512693/1‑71 (MQ=255) ttCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:1283160/71‑1 (MQ=255) ttCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:470645/71‑1 (MQ=255) tCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGAc > 1:219767/1‑62 (MQ=255) tCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGAc > 1:3699924/1‑62 (MQ=255) tCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGAc > 1:3954622/1‑62 (MQ=255) tCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGAc > 1:2813726/1‑62 (MQ=255) tCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:3520395/70‑1 (MQ=255) tCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATATGc > 1:2082750/1‑69 (MQ=255) ttAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:4329728/59‑1 (MQ=255) ttAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:657498/59‑1 (MQ=255) ttAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:2745119/59‑1 (MQ=255) cGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:3516885/1‑61 (MQ=255) cGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:1190599/1‑61 (MQ=255) cGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:110463/1‑61 (MQ=255) cGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGAGAGAAGATGACAATCTGCCa > 1:70461/1‑61 (MQ=255) ggCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgc < 1:4508988/71‑1 (MQ=255) ggCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgc < 1:736425/71‑1 (MQ=255) gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:3807976/1‑53 (MQ=255) gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:3783625/1‑53 (MQ=255) gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:1684842/1‑53 (MQ=255) gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:165568/1‑53 (MQ=255) gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:4869153/1‑53 (MQ=255) gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:3557356/1‑53 (MQ=255) gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAgg > 1:4477667/1‑70 (MQ=255) gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGa > 1:4760159/1‑71 (MQ=255) gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGa > 1:4208516/1‑71 (MQ=255) cgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGAc > 1:3986230/1‑71 (MQ=255) ccATAAACCACCAGATACATGCCGAGCGAGAAGATGAc > 1:1058160/1‑38 (MQ=255) ccATAAACCACCAGATACATGCCGAGCGAGAAGATGAc > 1:2076488/1‑38 (MQ=255) ccATAAACCACCAGATACATGCCGAGCGAGAAGATGAc > 1:4901168/1‑38 (MQ=255) cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:2543655/38‑1 (MQ=255) cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:2160791/38‑1 (MQ=255) cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:4741266/38‑1 (MQ=255) cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:1837648/38‑1 (MQ=255) cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:3779034/38‑1 (MQ=255) cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:1058710/38‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:2643766/43‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:2655549/43‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:4839466/42‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:792798/42‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:944278/42‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:3072604/42‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:2183705/42‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:2890437/42‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1114187/52‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1278359/52‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:5053945/52‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1640059/52‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:4425164/52‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTAccc > 1:3169769/1‑69 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCg > 1:302012/1‑70 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:1368904/1‑42 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:1564081/1‑44 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:1855670/1‑44 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:3203780/1‑44 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:4245624/1‑44 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:2717454/1‑44 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTa < 1:489454/70‑1 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAt > 1:3996750/1‑71 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAt > 1:824228/1‑71 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAt > 1:1811029/1‑71 (MQ=255) aGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg > 1:471589/1‑70 (MQ=255) aGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGc < 1:4850556/71‑1 (MQ=255) gATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa < 1:5047097/71‑1 (MQ=255) tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATg < 1:3476054/71‑1 (MQ=255) tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGAAt < 1:196274/70‑1 (MQ=255) aCATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:2745877/1‑71 (MQ=255) aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:2449413/1‑38 (MQ=255) aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:2969399/1‑38 (MQ=255) aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:2365532/1‑38 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:3760988/1‑70 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:2363060/1‑70 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:2643713/1‑70 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:4590037/1‑70 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcc > 1:2919275/1‑70 (MQ=255) gtgagaAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:2800717/69‑2 (MQ=255) gtgagaAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:3026550/69‑2 (MQ=255) gtgagaAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:4383066/69‑2 (MQ=255) gagaAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg < 1:1917654/55‑1 (MQ=255) gagaAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg < 1:4328686/55‑1 (MQ=255) agaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTa < 1:2224188/50‑1 (MQ=255) agaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTa < 1:786577/50‑1 (MQ=255) gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa > 1:1095870/1‑55 (MQ=255) gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa > 1:3299263/1‑55 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:3255475/62‑1 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:5078090/62‑1 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:2933304/62‑1 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:3610010/62‑1 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCCTATTAATCGCATGACcgcg < 1:728229/62‑1 (MQ=255) agaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTaa > 1:2548385/1‑48 (MQ=255) gaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGtt > 1:4425836/1‑62 (MQ=255) tGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa < 1:3021015/71‑1 (MQ=255) gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa > 1:1406680/1‑70 (MQ=255) gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa > 1:4341645/1‑70 (MQ=255) gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa > 1:3648213/1‑70 (MQ=255) | AAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACA > minE/2595683‑2595818 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |