BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	436259 =	48 (0.780)	66 (1.170)	29/92	NT	63.7%	intergenic (‑156/‑29)	ybfF/seqA	conserved hypothetical protein/regulatory protein for replication initiation
*	?	minE	= 2706018	31 (0.550)	66 (1.170)	29/92	NT	63.7%	coding (836/837 nt)	dam	DNA adenine methylase

Only 100 of 105 total aligned reads displayed.

GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/436331‑436259

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC  <  minE/2706018‑2705949

GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGA                                                                          <  1:2340940/71‑1

GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGA                                                                          <  1:1399646/71‑1

GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG                                                                           >  1:3541854/1‑70

GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG                                                                           >  1:3473399/1‑70

GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG                                                                           >  1:1282170/1‑70

  AATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT                                                                        <  1:443139/71‑1

      TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATT                                                                    >  1:601826/1‑71

            TAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCG                                                              <  1:3111756/71‑1

            TAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCG                                                              <  1:3222361/71‑1

            TAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTC                                                               <  1:3041188/70‑1

            TAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTC                                                               <  1:634147/70‑1

              GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC                                                             <  1:2221739/70‑1

              GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGGCTTAGCTGAATTATTTTTTCGC                                                             <  1:29244/70‑1

               AGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGG                                                           <  1:2420653/71‑1

               AGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGG                                                           <  1:2634850/71‑1

               AGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGG                                                           <  1:2697972/71‑1

               AGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGG                                                           >  1:693062/1‑71

                 TTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT                                                                  <  1:3765595/62‑1

                 TTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT                                                                  <  1:3134492/62‑1

                   CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG                                                        >  1:3234110/1‑70

                   CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG                                                        <  1:425644/70‑1

                   CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTT                                                                 >  1:431175/1‑61

                   CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAA                                                                         >  1:3157312/1‑53

                    ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAA                                                      <  1:2880513/71‑1

                     TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA                                                       <  1:1726543/69‑1

                      CATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA                                                       <  1:1185330/68‑1

                      CATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA                                                       <  1:1189736/68‑1

                      CATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA                                                       <  1:2061715/68‑1

                       ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACG                                                   <  1:1672807/71‑1

                       ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    <  1:2768431/70‑1

                       ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    <  1:897685/70‑1

                        TCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGA                                                  >  1:3218480/1‑71

                        TCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGA                                                  >  1:1548888/1‑71

                        TCAACTTCAATCGTTTTCATCTTAATCCAGTGAAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGA                                                  <  1:3073717/71‑1

                         CAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGAC                                                 >  1:3032987/1‑71

                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACT                                                >  1:2380299/1‑71

                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACT                                                >  1:1424010/1‑71

                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGAC                                                 <  1:3047994/70‑1

                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGAC                                                 <  1:3608947/70‑1

                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGA                                                  >  1:2484790/1‑69

                            CTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCC                                              >  1:2339178/1‑71

                            CTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCC                                              >  1:911307/1‑71

                               CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA                                                       <  1:2662274/59‑1

                               CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA                                                       <  1:1696520/59‑1

                               CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA                                                       <  1:3243408/59‑1

                                AATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA                                                                      <  1:2159777/43‑1

                                AATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA                                                                      <  1:2090705/43‑1

                                AATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA                                                                      <  1:3730982/43‑1

                                AATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA                                                                      <  1:3842796/43‑1

                                 ATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA                                                                      <  1:3671894/42‑1

                                  TCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC                                                             <  1:1132361/50‑1

                                  TCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATT                                                                    >  1:1184384/1‑43

                                    GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT                                                                  <  1:346009/43‑1

                                    GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT                                                                  <  1:3652892/43‑1

                                     TTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG                                                        <  1:3497707/52‑1

                                     TTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG                                                        <  1:441532/52‑1

                                       TTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTAC                                    >  1:1226192/1‑70

                                         CATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTC                                                               >  1:393072/1‑41

                                         CATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTC                                                               >  1:3541679/1‑41

                                         CATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTC                                                               >  1:510647/1‑41

                                             TTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC                               >  1:1582643/1‑69

                                             TTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC                               >  1:378735/1‑69

                                             TTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC                               >  1:1288448/1‑69

                                             TTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC                               >  1:3466894/1‑69

                                             TTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    <  1:2615717/48‑1

                                                ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGAC                                                 <  1:1754569/48‑1

                                                     GTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCG                     <  1:1657033/71‑1

                                                        CAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC                               <  1:1634739/58‑1

                                                          GTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCAC                >  1:1187838/1‑71

                                                          GTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAG                            <  1:3119796/59‑1

                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT             <  1:1921761/71‑1

                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT             >  1:3111100/1‑71

                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT             <  1:3489185/71‑1

                                                              CTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC                           <  1:265870/56‑1

                                                               TTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCG                     <  1:1581945/61‑1

                                                               TTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCG                     <  1:3392896/61‑1

                                                                 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTT          <  1:3020472/70‑1

                                                                 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTT          <  1:2038677/70‑1

                                                                 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT           <  1:3762677/69‑1

                                                                 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC                   >  1:121612/1‑61

                                                                 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGT                    >  1:762306/1‑60

                                                                 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAA                                 >  1:948464/1‑47

                                                                 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAA                                  >  1:3166824/1‑46

                                                                  GCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTAC        <  1:1239103/71‑1

                                                                  GCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTAC        >  1:1377773/1‑71

                                                                  GCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTAC        <  1:3679034/71‑1

                                                                    TGAATTATTTTTTCGCGGGTGAAACGACTCCTGGT                                          <  1:2961168/35‑1

                                                                     GAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGT      <  1:3008721/70‑1

                                                                     GAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG                         <  1:1553849/51‑1

                                                                      AATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGT    <  1:2906349/71‑1

                                                                      AATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGT    <  1:1475844/71‑1

                                                                      AATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA                                     >  1:3601504/1‑38

                                                                      AATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA                                     >  1:850443/1‑38

                                                                       ATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA                                     <  1:2976529/37‑1

                                                                        TTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC  <  1:1060937/71‑1

                                                                        TTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC  >  1:770707/1‑71

                                                                        TTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTAC        <  1:2293090/65‑1

                                                                        TTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC                           <  1:2476429/46‑1

                                                                        TTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC                           <  1:3297204/46‑1

                                                                        TTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC                           <  1:3426311/46‑1

GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/436331‑436259

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC  <  minE/2706018‑2705949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.