| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1537671 | 73 (1.190) | 9 (0.170) | 3/88 | NT | 10.7% | coding (834/897 nt) | yfcT | predicted outer membrane export usher protein |
| ? | minE | = 1537689 | 86 (1.600) | coding (816/897 nt) | yfcT | predicted outer membrane export usher protein | |||||
TCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTG‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1537596‑1537671‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctg‑aTGACATAAAGCCTGTCATTCAGGAGCAGACGCAACAGGTGACACCCACCGATCCCCCTGTTTCTGTTT < minE/1537689‑1537622 TCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCT > 1:451559/1‑71TCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCT > 1:1542900/1‑71TCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCT > 1:2226538/1‑71 CACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTG < 1:3756484/67‑1 ATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTG < 1:3805295/61‑1 ATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTG < 1:572972/61‑1 AAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTG‑ATGACATAAAGCCTGTCATT > 1:1449132/1‑69 AAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTG‑ATGACATAAAGCCTGTCATT > 1:2287955/1‑69 AAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTG‑ATGACATAAAGCCTGTCATT > 1:84707/1‑69 AAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTG‑ATGACATAAAGCCTGTCAT > 1:3468393/1‑68 CAGAAACAGGGGGATCTGTGGGTGTCACCTGTTGCGTCTGCTCCTG‑ATGACATAAAGCCTGTCATTCAGGA < 1:2347011/71‑1 CAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTG‑ATGACATAAAGCCTGTCATTCAGGA < 1:1575373/71‑1 AACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTGAATGACATAAAGCCTGTCATT > 1:1020933/1‑63 AACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTGAATGACATAAAGCCTGTCATT > 1:3004917/1‑63 AACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTGAATGACATAAAGCCTGTCATT > 1:3611904/1‑63 GGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTG < 1:3748930/38‑1 CCTG‑ATGACATAAAGCCTGTCATTCAGGAGCAGACGCAACAGGTGACACCCACCGATCCCCCTGTTTCTGT > 1:3163126/1‑71 CCTG‑ATGACATAAAGCCTGTCATTCAGGAGCAGACGCAACAGGTGACACCCACCGATCCCCCTGTTTCTGT > 1:2060917/1‑71 CCTG‑ATGACATAAAGCCTGTCATTCAGGAGCAGACGCAACAGGTGACACCCACCGATCCCCCTGTTTCTGT > 1:1693678/1‑71 CCTG‑ATGACATAAAGCCTGTCATTCAGGAGCAGACGCAACAGGTGACACCCACCGATCCCCCTGTTTCTGT > 1:1036525/1‑71 CTG‑ATGACATAAAGCCTGTCATTCAGGAGCAGACGCAACAGGTGACACCCACCGATCCCCCTGTTTCTGTT < 1:574578/71‑1 CTG‑ATGACATAAAGCCTGTCATTCAGGAGCAGACGCAACAGGTGACACCCACCGATCCCCCTGTTTCTGT < 1:3378155/70‑1 TG‑ATGACATAAAGCCTGTCATTCAGGAGCAGACGCAACAGGTGACACCCACCGATCCCCCTGTTTCTG < 1:959656/68‑1 G‑ATGACATAAAGCCTGTCATTCAGGAGCAGACGCAACAGGTGACACCCACCGATCCCCCTGTTTCTGTTT > 1:2105164/1‑70 ATGACATAAAGCCTGTCATTCAGGAGCAGACGCAACAGGTGACACCCACCGATCCCCCTGTTTCTGTTT < 1:2589143/69‑1 ATGACATAAAGCCTGTCATTCAGGAGCAGACGCAACAGGTGACACCCACCGATCCCCCTGTTTCTGTTT > 1:2343343/1‑69 ATGACATAAAGCCTGTCATTCAGGAGCAGACGCAACAGGTGACACCCA > 1:2596549/1‑48 TCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTG‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1537596‑1537671‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctg‑aTGACATAAAGCCTGTCATTCAGGAGCAGACGCAACAGGTGACACCCACCGATCCCCCTGTTTCTGTTT < minE/1537689‑1537622 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |