| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 323,651 | C→T | 7.0% | I21I (ATC→ATT) | htpG → | molecular chaperone HSP90 family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 323,651 | 0 | C | T | 7.0% | 232.2 / 6.0 | 71 | I21I (ATC→ATT) | htpG | molecular chaperone HSP90 family |
| Reads supporting (aligned to +/- strand): ref base C (38/28); new base T (3/2); total (41/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01 | |||||||||||
CCTACATGAAAGGACAAGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATCTCTAACGCCTCCGATGCGGCGGAC > minE/323584‑323720 | ccTACATGAAAGGACAAGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCa < 1:2255946/70‑1 (MQ=255)ccTACATGAAAGGACAAGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCa < 1:1574740/70‑1 (MQ=255) cTACATGAAAGGACAAGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCAtt > 1:2882928/1‑71 (MQ=255) cATGAAAGGACAAGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATtctc > 1:3190739/1‑71 (MQ=255) cATGAAAGGACAAGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATtctc > 1:2463670/1‑71 (MQ=255) cATGAAAGGACAAGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATtctc > 1:1330465/1‑71 (MQ=255) cATGAAAGGACAAGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATtct > 1:2099096/1‑70 (MQ=255) aGGACAAGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCa > 1:2066955/1‑60 (MQ=255) aCAAGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTcc > 1:387031/1‑70 (MQ=255) aCAAGAAACTCGTGGTTTTCAGTCAGAAGTGAAAAAGCTTCTGCACCTGATGATCCa > 1:2923948/1‑57 (MQ=255) cAAGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATtct > 1:3414076/1‑60 (MQ=255) aaGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCaa > 1:925145/1‑70 (MQ=255) aaGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCaa > 1:2949882/1‑70 (MQ=255) aaGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCaa > 1:2600398/1‑70 (MQ=255) aaGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCaa > 1:3326708/1‑70 (MQ=255) aaGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCaa > 1:1329571/1‑70 (MQ=255) aaaCTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATa > 1:1760882/1‑69 (MQ=255) aaaCTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATa > 1:2144113/1‑69 (MQ=255) aaaCTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATa > 1:672075/1‑69 (MQ=255) aaCTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATaaa < 1:1804515/70‑1 (MQ=255) gTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATtctctc < 1:604701/50‑1 (MQ=255) gTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATtctctc < 1:3569052/50‑1 (MQ=255) gTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTc < 1:1233004/71‑1 (MQ=255) tttCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAAt > 1:610590/1‑65 (MQ=255) tttCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCt > 1:371222/1‑71 (MQ=255) cagtcagAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGc < 1:1369884/70‑1 (MQ=255) gtcagAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATc < 1:3238967/61‑1 (MQ=255) tcagAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGa < 1:816421/71‑1 (MQ=255) tcagAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGa < 1:3861034/71‑1 (MQ=255) agAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGc > 1:2990543/1‑71 (MQ=255) aaGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCtt < 1:2270439/71‑1 (MQ=255) aaGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCt > 1:1903994/1‑70 (MQ=255) aGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTa < 1:3550891/71‑1 (MQ=255) aGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATACCAATAAAGAAATCTTCCTGCGTGAGCTTa < 1:32092/71‑1 (MQ=255) gTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGaaa < 1:999422/52‑1 (MQ=255) gTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTg < 1:2645261/64‑1 (MQ=255) aaaCAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTAtctc > 1:3263640/1‑71 (MQ=255) aaCAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATctct < 1:2622752/71‑1 (MQ=255) aCAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATCTCTa < 1:3053736/71‑1 (MQ=255) cAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGaa < 1:2806911/45‑1 (MQ=255) cAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGaa < 1:1192059/45‑1 (MQ=255) cAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGaa < 1:3326170/45‑1 (MQ=255) aGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATCTCTAAc > 1:2346884/1‑71 (MQ=255) ttCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATCTCTAACGcc > 1:3372737/1‑71 (MQ=255) tCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATCTCTAACGCCt > 1:3089595/1‑71 (MQ=255) cTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAAt > 1:3427458/1‑41 (MQ=255) cTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATCTCTAACGCCTc > 1:2425837/1‑71 (MQ=255) cTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATCTCTAACGCCTc > 1:2029569/1‑71 (MQ=255) gCACCTGATGCTCCATTCTCTCTATTCCAATAAAGAAATCTTcc > 1:1367647/1‑44 (MQ=255) gCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTcc > 1:1323488/1‑44 (MQ=255) gCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTcc > 1:380800/1‑44 (MQ=255) gCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATctct > 1:3042005/1‑61 (MQ=255) gCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATctct > 1:2331874/1‑61 (MQ=255) gCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATctct > 1:2294259/1‑61 (MQ=255) cACCTGATGATTCATTCTCTCTATTCGAACAAGGAAATCTTCCTCCGCGAACTGAtttcc < 1:578528/60‑2 (MQ=255) cACCTGATGATTCATTCTCTCTATTCGAACAAGGAAATCTTCCTCCGCGAACTGAtttcc < 1:352644/60‑2 (MQ=255) cTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCg < 1:831061/44‑1 (MQ=255) tgatgaTCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATctct < 1:2318751/56‑1 (MQ=255) tgatgaTCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATCTCTAACGCCTcc < 1:329765/65‑1 (MQ=255) gatgatCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATctct < 1:3105474/55‑1 (MQ=255) atgatCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATCTCTAACGCCTCCGATgcggc > 1:182401/1‑71 (MQ=255) atgatCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATCTCTAACGCCTCCGATgcggc > 1:1450887/1‑71 (MQ=255) atgatCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATCTCTAACGCCTCCGATgcg < 1:559793/69‑1 (MQ=255) tgatTCATTCTCTCTATTCGAACAAGGAAATCTTCCTCCGCGAACTGATTTCCAACGCCTCGGAcgccgcc > 1:3132299/1‑70 (MQ=255) tgatTCATTCTCTCTATTCGAACAAGGAAATCTTCCTCCGCGAACTGATTTCCAACGCCTCGGAcgccgcc > 1:1492779/1‑70 (MQ=255) tgatTCATTCTCTCTATTCGAACAAGGAAATCTTCCTCCGCGAACTGATTTCCAACGCCTCGGAcgccgcc > 1:1239532/1‑70 (MQ=255) tgatCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTAt > 1:1109411/1‑49 (MQ=255) tgatCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTAt > 1:2667968/1‑49 (MQ=255) atCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATCTCTAACGCCTCCGATGcggcgg < 1:789668/70‑1 (MQ=255) tCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATCTCTAACGCCTCCGATGCGGCGGAc < 1:3252897/71‑1 (MQ=255) tCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATCTCTAACGCCTCCGATGCGGCGGAc < 1:2694386/71‑1 (MQ=255) | CCTACATGAAAGGACAAGAAACTCGTGGTTTTCAGTCAGAAGTGAAACAGCTTCTGCACCTGATGATCCATTCTCTCTATTCCAATAAAGAAATCTTCCTGCGTGAGCTTATCTCTAACGCCTCCGATGCGGCGGAC > minE/323584‑323720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |