| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,076,795 | C→T | 7.4% | H121Y (CAT→TAT) | ebgC → | cryptic beta‑D‑galactosidase, beta subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,076,795 | 0 | C | T | 7.4% | 256.1 / 7.4 | 81 | H121Y (CAT→TAT) | ebgC | cryptic beta‑D‑galactosidase, beta subunit |
| Reads supporting (aligned to +/- strand): ref base C (28/46); new base T (2/4); total (30/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCGTGAATATTTAAAAGGCTGCGGAGAAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATG > minE/2076725‑2076864 | ccGTGAATATTTAAAAGGCTGCGGAGAAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATcc < 1:1407652/71‑1 (MQ=255) aaTATTTAAAAGGCTGCGGAGAAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATg > 1:658304/1‑69 (MQ=255) atatTTAAAAGGCTGCGGAGAAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGaa < 1:3494709/70‑1 (MQ=255) tatTTAAAAGGCTGCGGAGAAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCAt < 1:2617193/66‑1 (MQ=255) aaaGGCTGCGGAGAAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATc < 1:1296954/70‑1 (MQ=255) aaGGCTGCGGAGAAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCgg > 1:221060/1‑71 (MQ=255) aGGCTGCGGAGAAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGt > 1:1490019/1‑71 (MQ=255) gCTGCGGAGAAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGttt < 1:4367377/71‑1 (MQ=255) cGGAGAAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATc < 1:155103/70‑1 (MQ=255) agaAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGc < 1:2915783/70‑1 (MQ=255) agaAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCa < 1:202113/71‑1 (MQ=255) gaAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCaa > 1:4079187/1‑71 (MQ=255) gaAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCa < 1:66286/70‑1 (MQ=255) aaaCCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAAt < 1:4123844/71‑1 (MQ=255) aaCCGTTGATGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAg < 1:1320291/50‑1 (MQ=255) aaCCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAg < 1:10642/50‑1 (MQ=255) aaCCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAg < 1:242351/50‑1 (MQ=255) aaCCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAg < 1:4663567/50‑1 (MQ=255) aaCCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAg < 1:640330/50‑1 (MQ=255) aaCCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAg < 1:1682937/50‑1 (MQ=255) aaCCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAg < 1:3788417/50‑1 (MQ=255) aaCCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAg < 1:444224/50‑1 (MQ=255) aaCCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAg < 1:826452/50‑1 (MQ=255) aaCCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATc > 1:4529866/1‑56 (MQ=255) aaCCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATc > 1:3791314/1‑56 (MQ=255) aCCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATaa > 1:4079891/1‑71 (MQ=255) aCCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATaa > 1:640475/1‑71 (MQ=255) aCCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATaa > 1:500865/1‑71 (MQ=255) aCCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATaa > 1:766466/1‑71 (MQ=255) cggtGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAAcg < 1:3939220/68‑1 (MQ=255) cgatGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCTATGAAGCGTATCGGTTTATCTGCAATAAcg > 1:1863360/4‑71 (MQ=255) cGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCTATGAAGCGTATCGGTTTATCTGCAATAAcg > 1:1432724/1‑71 (MQ=255) cGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAAcg < 1:3075428/71‑1 (MQ=255) cGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAAcg < 1:4594457/71‑1 (MQ=255) cGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAAcg < 1:2193699/71‑1 (MQ=255) gatgTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGt > 1:110624/4‑71 (MQ=255) gAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCgg < 1:1682702/70‑1 (MQ=255) tCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGt < 1:3120025/42‑1 (MQ=255) tCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGt < 1:3164316/42‑1 (MQ=255) tCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGt < 1:1129294/42‑1 (MQ=255) tCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGt < 1:1253082/42‑1 (MQ=255) tCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGt < 1:3634891/42‑1 (MQ=255) tCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCaa > 1:4035999/1‑70 (MQ=255) ccACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCaaa > 1:1389369/1‑70 (MQ=255) cACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCt > 1:75883/1‑52 (MQ=255) cACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCt > 1:4629882/1‑52 (MQ=255) cACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCt > 1:4424742/1‑52 (MQ=255) cACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCaaaa > 1:2791001/1‑70 (MQ=255) cACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCaaaa > 1:1291235/1‑70 (MQ=255) cACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCaaaa > 1:1696713/1‑70 (MQ=255) cGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAg < 1:1948543/71‑1 (MQ=255) cGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAg < 1:3783815/71‑1 (MQ=255) cGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAg < 1:3070280/71‑1 (MQ=255) aaTCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATaa > 1:3569571/1‑48 (MQ=255) aaTCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATaa > 1:65749/1‑48 (MQ=255) aaTCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCaaaa < 1:1752563/59‑1 (MQ=255) aaTCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTtctc > 1:684668/1‑70 (MQ=255) aaTCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTtctc > 1:2615191/1‑70 (MQ=255) aaTCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCa < 1:4598779/71‑1 (MQ=255) aaTCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCa < 1:4553688/71‑1 (MQ=255) aaTCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCa < 1:740368/71‑1 (MQ=255) aaTCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCa < 1:3718357/71‑1 (MQ=255) aaTCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCa < 1:3683430/71‑1 (MQ=255) aaTCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCa < 1:3082215/71‑1 (MQ=255) aaTCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCa < 1:3043458/71‑1 (MQ=255) aaTCGTTATTTGCGATATCAATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCa < 1:2307741/71‑1 (MQ=255) aTCGTTATTTGCGATATCTATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCaa < 1:1142256/71‑1 (MQ=255) aTCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCaaaa < 1:1441456/58‑1 (MQ=255) aTCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCaaaa < 1:1691035/58‑1 (MQ=255) tCGTTATTTGCGATATCCATGAAGCGTATCGGTTTa > 1:3530660/1‑36 (MQ=255) tCGTTATTTGCGATATCCATGAAGCGTATCGGTTTa > 1:710093/1‑36 (MQ=255) cGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCaaaaaa > 1:1520558/1‑58 (MQ=255) gTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGt < 1:858489/71‑1 (MQ=255) tATTTGCGATATCTATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCaaaa < 1:745255/53‑1 (MQ=255) tATTTGCGATATCTATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCaaaa < 1:3469653/53‑1 (MQ=255) tATTTGCGATATCTATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCaaaa < 1:3642658/53‑1 (MQ=255) aTTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCaa < 1:3380108/50‑1 (MQ=255) aTTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCaa < 1:1041805/50‑1 (MQ=255) aTTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCaa < 1:3247653/50‑1 (MQ=255) ttGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAAcg < 1:4351614/41‑1 (MQ=255) tCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTtctc > 1:652034/1‑53 (MQ=255) tCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTtctc > 1:4249890/1‑53 (MQ=255) ccATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGaa < 1:3388676/67‑1 (MQ=255) ccATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGaa < 1:4507186/67‑1 (MQ=255) ccATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGaa < 1:1140609/67‑1 (MQ=255) ccATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAg > 1:1317513/1‑68 (MQ=255) ccATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATg > 1:4042474/1‑71 (MQ=255) cATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCa > 1:4017381/1‑58 (MQ=255) cATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCa > 1:673519/1‑58 (MQ=255) cATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCa > 1:3373034/1‑58 (MQ=255) cATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCa > 1:171612/1‑58 (MQ=255) cATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATg < 1:2733321/70‑1 (MQ=255) | CCGTGAATATTTAAAAGGCTGCGGAGAAACCGTTGAGGTCCACGAAGGGCAAATCGTTATTTGCGATATCCATGAAGCGTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATG > minE/2076725‑2076864 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |