| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,288,799 | A→T | 8.0% | intergenic (+108/‑490) | argE → / → ppc | acetylornithine deacetylase/phosphoenolpyruvate carboxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,288,799 | 0 | A | T | 8.0% | 172.6 / 5.3 | 61 | intergenic (+108/‑490) | argE/ppc | acetylornithine deacetylase/phosphoenolpyruvate carboxylase |
| Reads supporting (aligned to +/- strand): ref base A (32/24); new base T (3/2); total (35/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTGCCAAACTCCAGTGCCGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCACTGTTGCCAAACTCCAG > minE/2288733‑2288869 | ttGCCAAACTCCAGTGCCGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTc > 1:292032/1‑70 (MQ=40) cAAACTCCAGTGCCGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAAc > 1:4678212/1‑70 (MQ=40) aaaCTCCAGTGCCGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAAc < 1:4639973/69‑1 (MQ=40) aaaCTCCAGTGCCGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAAc < 1:2084466/69‑1 (MQ=40) aaCTCCAGTGCCGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAACGAt > 1:41196/1‑71 (MQ=39) aCTCCAGTGCCGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAACGAt < 1:1206124/70‑1 (MQ=40) ccGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCg < 1:3957682/70‑1 (MQ=255) ccGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCg < 1:4730046/70‑1 (MQ=255) gCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCGTAg > 1:2271043/1‑71 (MQ=255) cAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCGTAgg > 1:4089315/1‑71 (MQ=255) aatGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGa > 1:3434698/1‑44 (MQ=255) aatGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGa > 1:4025586/1‑44 (MQ=255) atGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCGTa > 1:4086561/1‑64 (MQ=255) gTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGAc > 1:1219942/1‑42 (MQ=255) tCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAACGa < 1:3164547/49‑1 (MQ=255) tCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAACGa < 1:828356/49‑1 (MQ=255) tCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAACGa < 1:1415168/49‑1 (MQ=255) tCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATa < 1:165461/70‑1 (MQ=255) tgcgatgcTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGgcgc > 1:1323680/1‑71 (MQ=255) gcgatgcTTGCGCATCTTATCCGACCTACAGTGTCTCa < 1:723654/38‑1 (MQ=255) gcgatgcTTGCGCATCTTATCCGACCTACAGTGTCTCa < 1:714655/38‑1 (MQ=255) gatgcTTGCGCATCTTATCCGACCTACAGTGTCTCaaa > 1:3602547/1‑38 (MQ=255) gatgcTTGCGCATCTTATCCGACCTACAGTGTCTCaaa > 1:1811896/1‑38 (MQ=255) gatgcTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCGTAgg < 1:2761899/55‑1 (MQ=255) gatgcTTGCGCATCTTATCAGACCTACAGTGTCTCaaa > 1:1487945/1‑38 (MQ=17) atgcTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCGTa < 1:1393461/52‑1 (MQ=255) atgcTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCGTa < 1:303343/52‑1 (MQ=255) atgcTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCGTa < 1:507319/52‑1 (MQ=255) atgcTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCGTa < 1:4365436/52‑1 (MQ=255) atgcTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCGTa < 1:3256708/52‑1 (MQ=255) atgcTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCGTa < 1:746785/52‑1 (MQ=255) tgcTTGCGCATCTTATCCGACCTACAGTGACTCAAAc < 1:3154464/37‑1 (MQ=255) tgcTTGCGCATCTTATCCGACCTACAGTGACTCAAAc < 1:4485481/37‑1 (MQ=255) tgcTTGCGCATCTTATCCGACCTACAGTGACTCAAACGa > 1:470643/1‑39 (MQ=255) tgcTTGCGCATCTTATCCGACCTACAGTGACTCAAACGa > 1:3312112/1‑39 (MQ=255) tgcTTGCGCATCTTATCCGACCTACAGTGACTCAAACGa > 1:1193485/1‑39 (MQ=255) tgcTTGCGCATCTTATCCGACCTACAGTGACTCAAACGa > 1:2283154/1‑39 (MQ=255) tgcTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGGCGCTcgcg > 1:852187/1‑71 (MQ=255) cTTGCGCATCTTATCCGACCTACAGTGACTCAAAc < 1:3710366/35‑1 (MQ=40) cTTGCGCATCTTATCCGACCTACAGTGACTCAAAc < 1:1920263/35‑1 (MQ=40) cTTGCGCATCTTATCCGACCTACAGTGACTCAAAc < 1:273004/35‑1 (MQ=40) cTTGCGCATCTTATCCGACCTACAGTGACTCAAAc < 1:4409404/35‑1 (MQ=40) cTTGCGCATCTTATCCGACCTACAGTGACTCAAAc < 1:4542857/35‑1 (MQ=40) tGCGCATCTTATCCGACCTACAGTGACTCAAACGa > 1:3942981/1‑35 (MQ=40) tGCGCATCTTATCCGACCTACAGTGACTCAAACGa > 1:1656935/1‑35 (MQ=40) tGCGCATCTTATCCGACCTACAGTGACTCAAACGa > 1:2035556/1‑35 (MQ=40) ttATCCGACCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGGCGCTCGCGCCGCATc > 1:1560600/1‑66 (MQ=40) tATCCGACCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAc > 1:2516694/1‑71 (MQ=39) tATCCGACCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGGCGCTAGCGCCGCATCCGGCAc > 1:3836201/1‑71 (MQ=255) aTCCGACCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCgg < 1:2839825/67‑1 (MQ=40) ccGACCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCACTGt > 1:259484/1‑71 (MQ=39) cGACCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGgcg > 1:2774505/1‑48 (MQ=255) cGACCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGgcg > 1:564729/1‑48 (MQ=255) cGACCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGgcg > 1:84495/1‑48 (MQ=255) cGACCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGgcg > 1:3693483/1‑48 (MQ=255) aCCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATaa > 1:2659163/1‑42 (MQ=255) aCCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATaa > 1:1742635/1‑42 (MQ=255) aCCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATaa > 1:3065324/1‑42 (MQ=255) cTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGGCGCTAGCGCCGCATCCGGCACt > 1:2981420/1‑64 (MQ=255) cAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCACTGTTGCCAAAc > 1:450586/1‑71 (MQ=34) cAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGGAGCTCGCGCCGCAt > 1:4431192/1‑53 (MQ=255) cAGTGACTCAAACGATGCCCAACCGTAGGCCGCATAAGGAGCTCGcgccg > 1:4431190/1‑50 (MQ=11) gTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCACTGTTGCCAAACt > 1:3322902/1‑70 (MQ=35) aCTCAAACGATGCCCAACCGTAGGCCGGATAAGGCGCTCGcgccgc > 1:1284468/1‑46 (MQ=38) aCTCAAACGATGCCCAACCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCACTGtt > 1:1377330/1‑59 (MQ=35) aCTCAAACGATGCCCAACCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCACTGTTGCCAAACTCCAg < 1:934853/71‑1 (MQ=34) | TTGCCAAACTCCAGTGCCGCAATAATGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAGTGACTCAAACGATGCCCAACCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCACTGTTGCCAAACTCCAG > minE/2288733‑2288869 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |