Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 189,651:1 +C 9.4% coding (1148/2142 nt) ldcC → lysine decarboxylase 2, constitutive

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE189,6511.C 9.4% 179.3 / 19.2 53coding (1148/2142 nt)ldcClysine decarboxylase 2, constitutive
Reads supporting (aligned to +/- strand):  ref base . (22/26);  new base C (3/2);  total (25/28)
Fisher's exact test for biased strand distribution p-value = 6.58e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.68e-01

CGAAACGCAATCGACCCACAAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATACCACCACCTCGCCCAGTTATCCCATTGT  >  minE/189583‑189720
                                                                     |                                                                     
cGAAACGCAATCGACCCACAAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAg                                                                      >  1:1049595/1‑70 (MQ=255)
cGAAACGCAATCGACCCACAAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAg                                                                      >  1:3454258/1‑70 (MQ=255)
cGAAACGCAATCGACCCACAAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAg                                                                      <  1:2076571/70‑1 (MQ=255)
   aaCGCAATCGACCCACAAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATg                                                                  <  1:2130320/71‑1 (MQ=255)
    aCGCAATCGACCCACAAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGa                                                                 >  1:2772430/1‑71 (MQ=255)
    aCGCAATCGACCCACAAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGa                                                                 >  1:1912756/1‑71 (MQ=255)
         aTCGACCCACAAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACg                                                               >  1:3144947/1‑68 (MQ=255)
          tCGACCCACAAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGaa                                                             >  1:30969/1‑69 (MQ=255)
          tCGACCCACAAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGaa                                                             >  1:1795071/1‑69 (MQ=255)
               ccACAAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGc                                                        >  1:577684/1‑69 (MQ=255)
                cacaAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATCACGAAGAGGCCtt                                                     >  1:2614385/1‑71 (MQ=255)
                 acaAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCttt                                                    <  1:3878029/71‑1 (MQ=255)
                  caAACTGCTGGCGGCGTTCTCTCAGGCTTCCATGATCCACGTTAAAGGTGACGTAAACGAAGAAACCTTTa                                                   <  1:106517/71‑1 (MQ=255)
                  caAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCttt                                                    >  1:109014/1‑70 (MQ=255)
                  caAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCttt                                                    >  1:342552/1‑70 (MQ=255)
                  caAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCttt                                                    >  1:1440890/1‑70 (MQ=255)
                   aaacTGCTGGCGGCGTTCTCTCAGGCTTCCATGATCCACGTTAAAGGTGACGTAAACGAAGAAACCTTTaa                                                  >  1:3327390/1‑71 (MQ=255)
                   aaacTGCTGGCGGCGTTCTCTCAGGCTTCCATGATCCACGTTAAAGGTGACGTAAACGAAGAAACCTTTaa                                                  >  1:3151622/1‑71 (MQ=255)
                   aaaaTGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGa                                                              >  1:3602599/1‑59 (MQ=255)
                    aaaTGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAAc                                                 <  1:468205/71‑1 (MQ=255)
                     aaTGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAACg                                                <  1:1989331/71‑1 (MQ=255)
                     aaTGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAACg                                                <  1:2524304/71‑1 (MQ=255)
                       tGCTGGCGGCGTTATCGCAGGCTTCGCTGATACACATTAAAGGCGAGTATGACGAag                                                            >  1:874904/1‑57 (MQ=255)
                         cTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAg                                             <  1:949683/70‑1 (MQ=255)
                         cTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAg                                             <  1:1100066/70‑1 (MQ=255)
                         cTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAg                                             <  1:1421299/70‑1 (MQ=255)
                            gcggcgTTCTCTCAGGCTTCCATGATCCACGTTAAAGGTGACGTAAACGAAGAAACCTTTAACGAAGCCt                                          <  1:1810438/70‑1 (MQ=9)
                               gcgTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTat                                      >  1:1164167/1‑71 (MQ=255)
                                  ttATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGaa                                                             <  1:2776494/45‑1 (MQ=255)
                                  ttATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGaa                                                             <  1:1195601/45‑1 (MQ=255)
                                  ttATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTatgat                                   <  1:3050058/71‑1 (MQ=255)
                                    aTCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTatgatg                                  >  1:541136/1‑70 (MQ=255)
                                     tCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGc                                 <  1:1846554/70‑1 (MQ=255)
                                               cGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGc                                                        >  1:1171744/1‑37 (MQ=255)
                                               cGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATaccaccacc                      >  1:2429243/1‑71 (MQ=255)
                                               cGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATaccaccacc                      >  1:1936249/1‑71 (MQ=255)
                                                gCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATACCACCACCt                     >  1:1620737/1‑71 (MQ=255)
                                                 atGATCCACGTTAAAGGTGACGTAAACGAAGAAACCTTTAACGAAGCCTACATGATGCACACCACCACTTc                    >  1:2163227/2‑71 (MQ=9)
                                                    aTCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATACCACCACCTCg                   >  1:608139/1‑69 (MQ=255)
                                                       cacaTTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATACCACCACCTCGCCCAg              <  1:3307876/71‑1 (MQ=255)
                                                        acaTTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATACCACCACCTCGCCCa               >  1:3013327/1‑69 (MQ=255)
                                                         caTTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATACCACCACCTCGCCCAGtt            <  1:723364/71‑1 (MQ=255)
                                                         caTTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATACCACCACCTCGCCCAGtt            <  1:2203421/71‑1 (MQ=255)
                                                         caTTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATACCACCACCTCGCCCAGt             >  1:14578/1‑70 (MQ=255)
                                                           ttAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGc                                            >  1:3027248/1‑37 (MQ=255)
                                                             aaaGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATa                              <  1:3889274/49‑1 (MQ=255)
                                                              aaGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTatg                                     <  1:207303/41‑1 (MQ=255)
                                                              aaGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTatg                                     <  1:204087/41‑1 (MQ=255)
                                                              aaGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATACCACCACCTCGCCCAGTTATccc       <  1:563082/71‑1 (MQ=255)
                                                               aGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATacca                           <  1:3345295/50‑1 (MQ=255)
                                                                 gCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATACCACCACCTCGcc                 <  1:2642849/58‑1 (MQ=255)
                                                                  cGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATACCTCCACCTCGCCCa               <  1:3931271/59‑1 (MQ=255)
                                                                  cGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATACCACCACCTCGCCCAGTTATCCCAttg   <  1:485159/71‑1 (MQ=255)
                                                                  cGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATACCACCACCTCGCCCAGTTATCCCAttg   <  1:3083419/71‑1 (MQ=255)
                                                                   gAGTATGACGATGAGGCCTTTAACGAAGCCTTTATGATGCATACCACCACCTCg                   <  1:3155015/54‑1 (MQ=255)
                                                                   gAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATACCACCACCTCGCCCAGTTATCCCAttgt  <  1:2170908/71‑1 (MQ=255)
                                                                     |                                                                     
CGAAACGCAATCGACCCACAAAATGCTGGCGGCGTTATCGCAGGCTTCGCTGATCCACATTAAAGGCGAGTATGACGAAGAGGCCTTTAACGAAGCCTTTATGATGCATACCACCACCTCGCCCAGTTATCCCATTGT  >  minE/189583‑189720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: