| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 223037 | 49 (0.950) | 20 (0.560) +TAGCACTGCCACGTAT |
10/70 | NT | 42.8% | intergenic (+92/‑88) | lpcA/prfH | D‑sedoheptulose 7‑phosphate isomerase/predicted peptide chain release factor |
| ? | minE | 1019195 = | 29 (0.560) | intergenic (+144/+82) | ydgA/uidC | conserved hypothetical protein/predicted outer membrane porin protein | |||||
TGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/222997‑223037‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTACGCCGCATCCGGCATAAAAA‑ACGCGCACTTTG > minE/1019195‑1019231 |||||||||||||||| ctATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATC < 1:3491278/69‑1ctATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATC < 1:2375456/69‑1ctATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATC < 1:2371030/69‑1 tATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCC > 1:790998/2‑71 ATGCCTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCG > 1:243104/1‑71 CTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCAT < 1:3283024/71‑1 CTGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCA > 1:1676041/1‑70 TGATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTT < 1:1167118/53‑1 GATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGT > 1:731175/1‑47 ATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAA < 1:1089040/71‑1 ATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAA < 1:2519465/71‑1 ATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAA < 1:1079391/71‑1 ATGCGACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAA < 1:2603307/70‑1 GACGCTGAACCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAAca < 1:2384417/71‑3 ACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAAcac < 1:1965463/71‑4 ACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATA < 1:297767/64‑1 ACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCAGGCATA < 1:697423/64‑1 ACGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCAC < 1:1691388/39‑1 CGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCG > 1:1409815/1‑58 CGCTGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTAT > 1:360096/1‑42 TGAAGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAACACGCG > 1:3902961/1‑70 aaGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAACACGCGCAC > 1:1828998/3‑71 aaGCGTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAACACGCGCA < 1:526000/68‑1 GTCTTATCATGCCTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAACACGCGCACTTTG < 1:2519438/71‑1 CTACATAGCACTGCCACGTATGTTTACACCGCATCCGGCATAAAAACACGCGCACTT < 1:2384928/57‑1 |||||||||||||||| TGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/222997‑223037‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTACGCCGCATCCGGCATAAAAA‑ACGCGCACTTTG > minE/1019195‑1019231 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |