| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 815014 | 40 (0.770) | 3 (0.070) | 3/88 | NT | 7.5% | coding (78/852 nt) | ispE | 4‑diphosphocytidyl‑2‑C‑methylerythritol kinase |
| ? | minE | = 815027 | 40 (0.890) | coding (65/852 nt) | ispE | 4‑diphosphocytidyl‑2‑C‑methylerythritol kinase | |||||
TCCCCATCGTCACGAAGCTCAATGCTGATGGTGTCGCCGTAATCAAGAAACTGAAACAGCGTTTGCAGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/814943‑815014‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgtgCGGATGGTTACCACACGCTGCAAACGCTGTTTCAGTTTCTTGATTACGGCGACACCATCAGCATTGAG < minE/815027‑814960 TCCCCATCGTCACGAAGCTCAATGCTGATGGTGTCGCCGTAATCAAGAAACTGAAACAGCGTTTGCAGCG < 1:2542160/70‑1TCCCCATCGTCACGAAGCTCAATGCTGATGGTGTCGCCGTAATCAAGAAACTGAAACAGCGTTTGC > 1:3440530/1‑66 CCCATCGTCACGAAGCTCAATGCTGATGGTGTCGCCGTAATCAAGAAACTGAAACAGCGTTTGCAGCGTG < 1:939470/70‑1 AATGCTGATGGTGTCGCCGTAATCAAGAAACTGAAACAGCGTTTGCAGCGTGCGGATGGTTACCACACG < 1:227466/69‑1 TGCTGATGGTGTCGCCGTAATCAAGAAACTGAAACAGCGTTTGCAGCG < 1:2578544/48‑1 GCTGATGGTGTCGCCGTAATCAAGAAACTGAAACAGCGTTTGCAGCGTGCGGATGGTTACCACACGC > 1:2619054/1‑67 CTGATGGTGTCGCCGTAATCAAGAAACTGAAACAGCGTTTGCA < 1:2048411/43‑1 AATCAAGAAACTGAAACAGCGTTTGCAGCGTGCGGATGGTTACC < 1:3900062/44‑1 CAGCGTGCGGATGGTTACCACACGCTGCAAACGCTGTTTCAGTTTCTTGATTACGACGACACCATCAGCAT > 1:1598675/1‑71 AGCGTGCGGATGGTTACCACACGCTGCAAACGCTGTTTCAGTTTCTTGATTACGGCGACACCATCAGCATT < 1:1763066/71‑1 AGCGTGCGGATGGTTACCACACGCTGCAAACGCTGTTTCAGTTTCTTGATTACGGCGACACCATCAGCATT < 1:2959833/71‑1 CGTGCGGATGGTTACCACACGCTGCAAACGCTGTTTCAGTTTCTTG > 1:1755314/1‑46 CGTGCGGATGGTTACCACACGCTGCAAACGCTGTTTCAGTTTCTTG > 1:812025/1‑46 GTGCGGATGGTTACCACACGCTGCAAACGCTGTTTCAGTTTCTTGATTACGGCGACACCATCAGCATTGAG > 1:3161479/1‑71 TCCCCATCGTCACGAAGCTCAATGCTGATGGTGTCGCCGTAATCAAGAAACTGAAACAGCGTTTGCAGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/814943‑815014‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgtgCGGATGGTTACCACACGCTGCAAACGCTGTTTCAGTTTCTTGATTACGGCGACACCATCAGCATTGAG < minE/815027‑814960 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |