New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	1039924 =	45 (0.870)	3 (0.060)	3/92	NT	6.5%	intergenic (+75/‑536)	nth/ydgR	DNA glycosylase and apyrimidinic (AP) lyase/predicted transporter
	?	minE	1039951 =	46 (0.980)					intergenic (+102/‑509)	nth/ydgR	DNA glycosylase and apyrimidinic (AP) lyase/predicted transporter

AAAAAAACAATTAACCTGCATTTTTGGTTATCCGCAAACGGATTACCTGATGATAACGCTAAGCAATGG‑‑‑CATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/1039997‑1039924 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcaGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAATTGTTTT  >  minE/1039951‑1039994                                                                                                                           AAAAAAACAATTAACCTGCATTTTTGGTTATCCGCAAACGGATTACCTGATGATAACGCTAAGCAATGG‑‑‑CA                                                 >  1:1915767/1‑71 AAAAAAACAATTAACCTGCATTTTTGGTTATCCGCAAACGGATTACCTGATGATAACGCTAAGCAATGG‑‑‑CA                                                 >  1:3897385/1‑71  AAAAAACAATTAACCTGCATTTTTGGTTATCCGCAAACGGATTACCTGATGATAACGCTAAGCAATGG‑‑‑CA                                                 <  1:3632715/70‑1    AAAACAATTAACCTGCATTTTTGGTTATCCGCAAACGGATTACCTGATGATAACGCTAAGCAATGG‑‑‑CATCA                                              <  1:2983418/71‑1     AAACAATTAACCTGCATTTTTGGTTATCCGCAAACGGATTACCTGATGATAACGCTAAGCAATGG‑‑‑CATC                                               >  1:2680443/1‑69          ATTAACCTGCATTTTTGGTTATCCGCAAACGGATTACCTGATGATAACGCTAAGCAATGG‑‑‑C                                                  <  1:2502711/61‑1                                               CTGATGATAACGCTAAGCAATGG‑‑‑CATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAAT        <  1:3491769/66‑1                                                   TGATAACGCTAAGCAATGGCATCATCAGGTAATCCGTTTGCGGATAACCAAAAATGC‑GGTTAATTGTTTT  >  1:2928778/1‑70                                                       AACGCTAAGCAATGG‑‑‑CATCAGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAATT       >  1:3686236/1‑59                                                                                                                           AAAAAAACAATTAACCTGCATTTTTGGTTATCCGCAAACGGATTACCTGATGATAACGCTAAGCAATGG‑‑‑CATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/1039997‑1039924 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcaGGTAATCCGTTTGCGGATAACCAAAAATGCAGGTTAATTGTTTT  >  minE/1039951‑1039994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.