| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1591595 = | 33 (0.640) | 49 (1.100) +ACATCAA |
17/88 | NT | 56.9% | intergenic (+54/+135) | yfeS/cysM | conserved hypothetical protein/cysteine synthase B |
| ? | minE | 1864319 = | 53 (1.020) | intergenic (+66/+82) | ygcP/ygcQ | predicted anti‑terminator regulatory protein/predicted flavoprotein | |||||
TATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1591646‑1591595‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAA > minE/1864319‑1864358 ||||||| gccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTAATGCCGCATCCGACATCAACGCCTGATGCGA > 1:1712698/4‑71 ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGAC > 1:279019/3‑71 cTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTG < 1:3023827/62‑1 cTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTG < 1:1515700/62‑1 cTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTG < 1:573430/62‑1 TGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATG > 1:2714985/1‑65 TGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAT > 1:2038921/1‑53 gatTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT > 1:800747/4‑71 gatTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT > 1:351329/4‑71 atTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTT < 1:3225617/69‑1 atTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCT > 1:541617/3‑70 atTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTT > 1:2856372/3‑71 atTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTT < 1:3521988/69‑1 atTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTT > 1:1298180/3‑71 atTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTT > 1:2248164/3‑71 atTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAA > 1:421014/3‑54 tTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTa < 1:873801/70‑2 tTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT > 1:189275/2‑61 cgtGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCGGATGCGACGCTTAACGC < 1:3529163/67‑1 gtGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGT > 1:1139882/3‑71 GATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTC > 1:1099010/1‑70 GATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTC > 1:2433217/1‑70 ATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCT > 1:1342290/1‑70 TTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACG > 1:969151/1‑55 TTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAT < 1:2019613/70‑1 TGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATC < 1:3765823/70‑1 TGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAC > 1:2163208/1‑41 GTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCA < 1:1235923/70‑1 GTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCA < 1:1576870/70‑1 GTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCA < 1:2287383/70‑1 TAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGG < 1:2784971/71‑1 TAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAG < 1:2708781/70‑1 AGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGC > 1:1841386/1‑71 tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTA > 1:1208360/2‑71 tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCAGCGTCTTATCAGGCCTA > 1:1896200/2‑71 CGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC > 1:2838742/1‑71 CGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAT > 1:287855/1‑62 GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACg < 1:2167983/71‑2 GGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACg > 1:1834397/1‑70 GGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGC > 1:3308408/1‑47 GATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACgc < 1:3496256/71‑3 GATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACgc < 1:3770279/71‑3 ATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGAC < 1:1628412/43‑1 ATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAtc > 1:2039726/1‑67 TAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACgc > 1:2336942/1‑67 TAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACgc > 1:2597252/1‑67 TAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTT > 1:1947796/1‑46 AAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACgc > 1:2146674/1‑66 TTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCG < 1:243830/45‑1 TTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCA < 1:617188/53‑1 TTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG < 1:1168714/45‑1 CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATC < 1:3845228/45‑1 ATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAtc < 1:2678970/51‑3 ||||||| TATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1591646‑1591595‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAA > minE/1864319‑1864358 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |