| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2500401 = | 76 (1.470) | 3 (0.070) | 3/88 | NT | 4.9% | coding (293/1503 nt) | uhpB | sensory histidine kinase in two‑component regulatory sytem with UhpA |
| ? | minE | 2500429 = | 50 (1.120) | coding (321/1503 nt) | uhpB | sensory histidine kinase in two‑component regulatory sytem with UhpA | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2500474‑2500401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcagcgTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTAACGGCGGCGGCGTTGTTGCAGTCGCTGCCCTGG > minE/2500429‑2500498 CGCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCA < 1:3929475/71‑1CGCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCA < 1:3151739/71‑1CGCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATC < 1:520681/70‑1 CGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGA < 1:1644136/65‑1 CCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAG > 1:3822587/1‑67 CCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGA < 1:2234839/63‑1 ACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCA < 1:3552787/45‑1 TGATGGCGATAGCGCGAGATCAGCGTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTAACGGCGGCG > 1:2642533/1‑71 ATGGCGATAGCGCGAGATCAGCGTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTA < 1:1467617/60‑1 GATAGCGCGAGATCAGCGTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTAACGGCAGCGGCGTTGT < 1:1899783/71‑1 ATCAGCGTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTAACGGCGGCGGCGTTGTTGCAGTCGCTG > 1:3491599/1‑71 ATCAGCGTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTAACGGCGGCGGCGTTGTTGCAGTCGCT > 1:1202431/1‑70 TCAGCGTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTT < 1:2434043/42‑1 TCAGCGCGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTAACGGCGGCGGCGTTGTTGCAGT < 1:599308/65‑1 CAGCGTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTAACGGCGGCGGCGTTGTTGCAGTCGCTGCC > 1:1175899/1‑71 CAGCGTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGT > 1:3214549/1‑40 AGCGTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTAACGGCGGCGGCGTTGTTGCAGTCGCTGCCC > 1:3057223/1‑71 AGCGTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTAACGGCGGCGGCGTTGTTGCAGTCGCTGCCC > 1:122292/1‑71 AGCGTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTAACGGCGGCGGCGTTGTT < 1:3125970/58‑1 AGCGTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTAAC > 1:3121123/1‑43 AGCGTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCCTTAACGGCGGCGGCGTTGTTGCAGTCGCTGCCC < 1:3626238/71‑1 GCGTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTAACGGCGGCGGCGTTGTTGCAGTCGCTGCCCT < 1:3133200/71‑1 GCGTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTAACGGCGGCGGCGTTGTTGCAGTCGCTGCCCT < 1:3699985/71‑1 GTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTAACGGCGGCGGCGTTGTTGCAGTCGCTGCCCTGG > 1:1941455/1‑71 GTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTT < 1:2418489/37‑1 CGCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2500474‑2500401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcagcgTGACTGGCGCACCTTGCTGTTACAGGGGGCGGCGTTAACGGCGGCGGCGTTGTTGCAGTCGCTGCCCTGG > minE/2500429‑2500498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |