| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2533382 = | 76 (1.470) | 3 (0.060) | 3/96 | NT | 4.3% | coding (6/1035 nt) | rfaQ | lipopolysaccharide core biosynthesis protein |
| ? | minE | 2533402 = | 63 (1.290) | coding (26/1035 nt) | rfaQ | lipopolysaccharide core biosynthesis protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2533453‑2533382‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatTAACTACTCCTGTCATCAGTACGCTCAAGCAGAATTATCCTGATGCAAAAATCGATATGCTGCTTTAT > minE/2533402‑2533469 ATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATA < 1:1235935/71‑1ATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATA < 1:1427788/71‑1 TTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATAT > 1:77219/1‑71 TTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATAT < 1:3000763/68‑1 TCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATAT > 1:1387777/1‑53 TTAATAACATATCCCCATGATATTAACTACTCCTGTCATCAGTACGCTCAAGCAGAATTATCC < 1:2957863/63‑1 TTAATAACATATCCCCATGATATTAACTACTCCTGTCATCAGTACGCTCAAGCAGAATTA < 1:3527541/60‑1 TATCCCCATGATATTAACTACTCCTGTCATCAGTACGCTCAAGCAGAATTATCCTGATGCAAAAATCGATA > 1:2249011/1‑71 TATTAACTACTCCTGTCATCAGTACGCTCAAGCAGAATTATC > 1:1127937/1‑42 TATTAACTACTCCTGTCATCAGTACGCTCAAGCAGAATTATC > 1:1566592/1‑42 TATTAACTACTCCTGTCATCAGTACGCTCAAGCAGAATTATC > 1:884507/1‑42 ATTAACTACTCCTGTCATCAGTACGCTCAAGCAGAATTATCCTGATGCAAAAATCGATATGCTGCTTTAT > 1:2091077/1‑70 ATTAACTACTCCTGTCATCAGTACGCTCAAGCAGAATTATCCTGATGCAAAAATCGATATGCTGCTTTAT < 1:3134449/70‑1 ATTAACTACTCCTGTCATCAGTACGCTCAAGCAGAATTATCCTGATGCAAAAATCGATATGCTGCTTTAT < 1:426508/70‑1 ATTAACTACTCCTGTCATCAGTACGCTCAAGCAGAATTATCCTGAT > 1:9382/1‑46 TTAACTACTCCTGTCATCAGTACGCTCAAGCAGAATTATCCTGATGCAAAAATCGATATGCTGCTTTAT > 1:164161/1‑69 ATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2533453‑2533382‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatTAACTACTCCTGTCATCAGTACGCTCAAGCAGAATTATCCTGATGCAAAAATCGATATGCTGCTTTAT > minE/2533402‑2533469 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |