| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2702617 | 71 (1.370) | 3 (0.060) | 3/92 | NT | 4.3% | coding (8/1089 nt) | aroB | 3‑dehydroquinate synthase |
| ? | minE | = 2702628 | 69 (1.480) | coding (19/1089 nt) | aroB | 3‑dehydroquinate synthase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAGCAACTAATTCTGGCTTTATATACACTCGTCTGCGGGTACAGTAATTAAGGTGGATGTCGCGTTATGGAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2702544‑2702617‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagagTAACGACAATCCTCTCCATAACGCGACATCCACCTTAATTACTGTACCCGCAGACGAGTGTATATA < minE/2702628‑2702563 AAGCAACTAATTCTGGCTTTATATACACTCGTCTGCGGGTACAGTAATTAAGGTGGATGTCGCGTTATGGA < 1:539482/71‑1AAGCAACTAATTCTGGCTTTATATACACTCGTCTGCGGGTACAGTAATTAAGGTGGATGTCGCGTTATGGA < 1:605543/71‑1 CAACTAATTCTGGCTTTATATACACTCGTCTGCGGGTACAGTAATTAAGGTGGATGTCGCGTTATGGAG < 1:3347341/69‑1 ACTAATTCTGGCTTTATATACACTCGTCTGCGGGTACAGTAATTAAGGTGGATGTCGCGTTATGGAGAG > 1:3034233/1‑69 GGCTTTATATACACTCGTCTGCGGGTACAGTAATTAAGGTGGATGTCGCGTTATGGAGAG < 1:2923986/60‑1 TACACTCGTCTGCGGGTACAGTAATTAAGGTGGATGTCGCGTTATGGAGAGTAACGACAATCCTCTCCATA < 1:2061132/71‑1 CACTCGTCTGCGGGTACAGTAATTAAGGTGGATGTCGCGTTATGGAGAG < 1:474062/49‑1 GTCTGCGGGTACAGTAATTAAGGTGGATGTCGCGTTATGGAGAGTAACGACAATCCTC < 1:1060086/58‑1 TGGATGTCGCGTTATGGAGAGTAACGACAATCCTCT > 1:1384327/1‑36 AGAGTAACGACAATCCTCTCCATAACGCGACATCCACCTTAATTACTGTACCCGCAGACGAGTGTATATA > 1:1301002/1‑70 AGAGTAACGACAATCCTCTCCATAACGCGACATCCACCTTAATTACTGTACCCGCAGACGAGTGTATATA > 1:489/1‑70 AGAGTAACGACAATCCTCTCCATAACGCGACATCCACCTTAATT < 1:3556273/44‑1 GTAACGACAATCCTCTCCATAACGCGACATCCACCTT < 1:2308183/37‑1 AAGCAACTAATTCTGGCTTTATATACACTCGTCTGCGGGTACAGTAATTAAGGTGGATGTCGCGTTATGGAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2702544‑2702617‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagagTAACGACAATCCTCTCCATAACGCGACATCCACCTTAATTACTGTACCCGCAGACGAGTGTATATA < minE/2702628‑2702563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |