| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2843507 | 62 (1.200) | 4 (0.090) | 3/88 | NT | 6.2% | coding (474/1809 nt) | frdA | fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit |
| ? | minE | = 2843526 | 67 (1.500) | coding (455/1809 nt) | frdA | fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit | |||||
GCACCAGCGTGCCTTCCATCATGTTCATTGCTACCAGGCCGCGAACATGACCATCATCAACCAGAATATCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2843434‑2843507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccagcGTTTTGACGAACATTTCGTGCTGGATATTCTGGTTGATGATGGTCATGTTCGCGGCCTGGTAGCAATGA < minE/2843526‑2843458 GCACCAGCGTGCCTTCCATCATGTTCATTGCTACCAGGCCGCGAACATGACCATCATCAACCAGAATATC > 1:26991/1‑70 TCATGTTCATTGCTACCAGGCCGCGAACATGACCATCATCAACCAGAATATCCAGCGTTTTGACGAACATT > 1:2222208/1‑71 TCATGTTCATTGCTACCAGGCCGCGAACATGACCATCATCAACCAGAATATCCAGCGTTTTGACGAACATT > 1:3058997/1‑71 CTACCAGGCCGCGAACATGACCATCATCAACCAGAATATCCAGCGTTTTGACGAACATTTCGTGCTGGATA < 1:82616/71‑1 CCAGGCCGCGAACATGACCATCATCAACCAGAATATCCAGCGTTTTGACGAACATTTCGTGCTGGATATTC < 1:764910/71‑1 ATCCAGCGTTTTGACGAACATTTCGTGCTGGATATTCTGGTTGATGATGGTCATGTTCGCGGCC < 1:3566941/64‑1 ATCCAGCGTTTTGACGAACATTTCGTGCTGGATATTCTGGTTGATGATGGTCATGTTCGCGGCC < 1:4240/64‑1 TCCAGCGTTTTGACGAACATTTCGTGCTGGATATTCTGGTTGATGATGGTCATGTTC < 1:3333174/57‑1 CCAGCGTTTTGACGAACATTTCGTGCTGGATATTCTGGTTGATGATGGTCATGTTCGCGGCCTGGTAGCAA > 1:3417876/1‑71 CCAGCGTTTTGACGAACATTTCGTGCTGGATATTCTGGTTGA > 1:2068386/1‑42 CCAGCGTTTTGACGAACATTTCGTGCTGGATATTCTGGTT > 1:3640246/1‑40 AGCGTTTTGACGAACATTTCGTGCTGGATATTCTGGTTGATGATGGTCATGTTCGCGGCCTGGTAGCAATG < 1:881401/71‑1 AGCGTTTTGACGAACATTTCGTGCTGGATATTCTGGTTGATGATGGTCATGT < 1:3842051/52‑1 AGCGTTTTGACGAACATTTCGTGCTGGATATTCTGGTTGATGATGGTCATGT < 1:443181/52‑1 GCGTTTTGACGAACATTTCGTGCTGGATATTCTGGTTGATGATGGTCATGTTCGCGGCCTGGTAGCAATGA < 1:890834/71‑1 GCGTTTTGACGAACATTTCGTGCTGGATATTCTGGTTGATGATGGTCATGTTCGCGGCCTGGTAGCAATGA < 1:1992907/71‑1 GCGTTTTGACGAACATTTCGTGCTGGATATTCTGGTTGATGATG < 1:2319427/44‑1 GCGTTTTGACGAACATTTCGTGCTGGATATTCTGGTTGATGATG < 1:1122769/44‑1 GCACCAGCGTGCCTTCCATCATGTTCATTGCTACCAGGCCGCGAACATGACCATCATCAACCAGAATATCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2843434‑2843507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccagcGTTTTGACGAACATTTCGTGCTGGATATTCTGGTTGATGATGGTCATGTTCGCGGCCTGGTAGCAATGA < minE/2843526‑2843458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |