| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 174251 | 54 (1.040) | 4 (0.080) | 3/96 | NT | 7.9% | coding (524/762 nt) | ispU | undecaprenyl pyrophosphate synthase |
| ? | minE | = 174268 | 42 (0.860) | coding (541/762 nt) | ispU | undecaprenyl pyrophosphate synthase | |||||
ACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAGGACTGGGGGGGAGCATCGCATTAGTAA > minE/174198‑174335 | aCTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATg > 1:3391795/1‑71 (MQ=255) cTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGt < 1:878753‑M2/71‑2 (MQ=255) gCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTg > 1:45061/1‑71 (MQ=255) gCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTg < 1:3475965/71‑1 (MQ=255) cTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGt < 1:2906067/71‑1 (MQ=255) gAAAAGGTGGAGCAAGGAAACCTGCTACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGtct > 1:1483958‑M2/1‑64 (MQ=255) aaaaGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTAt < 1:61400/70‑1 (MQ=255) aaaaGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATg > 1:1168579/1‑71 (MQ=255) aaaGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGc < 1:1500662/71‑1 (MQ=255) aaaGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGc < 1:1412284/71‑1 (MQ=255) aGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCAt < 1:2090087/71‑1 (MQ=255) ggTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATg < 1:1312967/71‑1 (MQ=255) ggTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATg < 1:2948050/71‑1 (MQ=255) tGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGaa < 1:3915865/71‑1 (MQ=255) gcagcaAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAAc > 1:1835791/1‑71 (MQ=255) agcaAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTAt < 1:2886521/61‑1 (MQ=255) agcaAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTAt < 1:1193339/61‑1 (MQ=255) agcaAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGa < 1:2409611/67‑1 (MQ=255) agcaAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTg > 1:2735049/1‑71 (MQ=255) aaGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGcc > 1:3827120/1‑71 (MQ=255) aGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGccc < 1:855955/71‑1 (MQ=255) aGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGccc < 1:2777428/71‑1 (MQ=255) ggAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAAGCAGCATGTCTGTATGCATGAACTGGcccc < 1:3013457/71‑1 (MQ=255) ggAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGcccc < 1:3871935/71‑1 (MQ=255) aaaCCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTg < 1:1274327/71‑1 (MQ=255) aaCCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGt < 1:3548865/71‑1 (MQ=255) aCCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTg > 1:1930756/1‑69 (MQ=255) ccTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTAt < 1:3919518/51‑1 (MQ=255) cAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGAt < 1:2252059/69‑1 (MQ=255) cAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGAt < 1:2352197/69‑1 (MQ=255) aaCCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTa < 1:192618/71‑1 (MQ=255) aCCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGtct < 1:3793857‑M2/41‑4 (MQ=255) aCCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGtc < 1:3888615‑M2/40‑3 (MQ=255) cagatcagatAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGt > 1:3154959/1‑70 (MQ=255) cagatcagatAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGACCCTGTAGATTTAGt > 1:2565856/1‑70 (MQ=255) gatcagatAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGaa > 1:3196907/1‑48 (MQ=255) gatcagatAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAAt < 1:1301769/71‑1 (MQ=255) gatcagatAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAAt < 1:1325296/71‑1 (MQ=255) gatcagatAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAAt < 1:1237277/71‑1 (MQ=255) atcagatAGATGAAGAGATGCTAAACCAGCATGTCTg < 1:752965/37‑1 (MQ=255) atcagatAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGAtt < 1:1858401/63‑1 (MQ=255) atcagatAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGAtt < 1:1521729/63‑1 (MQ=255) tcagatAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTa < 1:2589981/71‑1 (MQ=255) agatagatGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGAtt < 1:2861788/60‑1 (MQ=255) agatagatGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAg < 1:2960815/70‑1 (MQ=255) atagatGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTa > 1:3294754/1‑67 (MQ=255) aaGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGt > 1:3695566/1‑55 (MQ=255) agagATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAGGACTgggggg > 1:755168/1‑70 (MQ=255) gagaTGCTAAACCAGCATGtcttcatctatctgatctggttgcaggtttccttgctgcaccttttc > 1:912800‑M2/1‑19 (MQ=255) agaTGCTAAACCAGCATGtcttcatctatctgatctggttgc > 1:2936535‑M2/1‑18 (MQ=255) agaTGCTAAACCAGCATGtcttcatctatctgatctggttgc > 1:3866783‑M2/1‑18 (MQ=255) aTGCTAAACCAGCATGtcttcatctatctgatctggttgcag < 1:1726951‑M2/42‑27 (MQ=255) aTGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCt < 1:2473867/39‑1 (MQ=255) aaaCCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGAttt > 1:883072/1‑42 (MQ=255) aaCCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAGGACTGGGGGGGAGCATCGc < 1:3523143/69‑1 (MQ=255) aaCCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAGGACTGGGGGGGAGCATCGCa < 1:239109/70‑1 (MQ=255) aaCCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAGGACTGGGGGGGAGCATCGCAt < 1:2129225/71‑1 (MQ=255) aCCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAGGACTGGGGGGGAGCATCGCAt > 1:1997041/1‑70 (MQ=255) ccAGCATGTCTGTATGCATGAACTGGCCCCTTTAGATTTAGTAATTAGGACT‑‑GGGGGAGCATCGCATTAg > 1:743214/1‑70 (MQ=255) cAGCATGTCTGTATGCATGAAGTGGCCCCTGTAGATTTAATAATTAGGACTGGGGGGGAGCATCg < 1:1993228/65‑1 (MQ=255) gCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAGGACTGGGGGGGAGCATCGCATTAGt > 1:138083/1‑70 (MQ=255) gCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAGGACTGGGGGGGAGCATCGCATTAGTa < 1:2020500/71‑1 (MQ=255) gCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAGGACTGGGGGGGAGCATCGCATTAGTa < 1:1740704/71‑1 (MQ=255) cATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAGGACTGGGGGGGAGCATCGCATTAGTaa < 1:1218440/71‑1 (MQ=255) aTGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGt > 1:3716042/1‑37 (MQ=255) | ACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAGGACTGGGGGGGAGCATCGCATTAGTAA > minE/174198‑174335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |