| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1396187 = | 42 (0.810) | 4 (0.090) | 3/90 | NT | 10.4% | coding (893/1182 nt) | setB | lactose/glucose efflux system |
| ? | minE | 1396206 = | 32 (0.700) | coding (912/1182 nt) | setB | lactose/glucose efflux system | |||||
TTTCTTAATGCGCGTTGCTGCCGTGGGTGGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTCTGGGCGGCATCGGGA > minE/1396140‑1396273 | tttCTTAATGCGCGTTGCTGCCGTGGGTGGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCAc < 1:3880100/68‑1 (MQ=255) ttCTTAATGCGCGTTGCTGCCGTGGGTGGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGt > 1:1723274/1‑71 (MQ=255) tCTTAATGCGCGTTGCTGCCGTGGGTGGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCt > 1:901716/1‑68 (MQ=255) tAATGCGCGTTGCTGCCGTGGGTGGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCa > 1:2620765/1‑69 (MQ=255) tGCGCGTTGCTGCCGTGGGTGGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTg < 1:1641718/71‑1 (MQ=255) tGCGCGTTGCTGCCGTGGGTGGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTg < 1:776548/71‑1 (MQ=255) tGCGCGTTGCTGCCGTGGGTCGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTg < 1:2066866/71‑1 (MQ=255) gctgcCGTGGGTGGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGtt < 1:2930989/65‑1 (MQ=255) gctgcCGTGGGTGGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCt < 1:3553903/70‑1 (MQ=255) ctgcCGTGGGTGGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCtt < 1:3081324/70‑1 (MQ=255) ctgcCGTGGGTGGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTg < 1:1563719/71‑1 (MQ=255) ctgcCGTGGGTGGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTg < 1:2740311/71‑1 (MQ=255) ccGTGGGTGGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGc < 1:2183678/69‑1 (MQ=255) ccGTGGGTGGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAg > 1:1156065/1‑71 (MQ=255) gctgcaagcccaacagaatgacaggtGAATGCTGATGGCGCATTCa < 1:2171209‑M1/20‑1 (MQ=255) ggtggCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGt > 1:281512/1‑55 (MQ=255) ggtggCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAgctgct < 1:2824744/71‑1 (MQ=255) tggCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTaa < 1:1557043/71‑1 (MQ=255) tggCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTaa < 1:2015104/71‑1 (MQ=255) gCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAAt > 1:3091735/1‑71 (MQ=255) tttttACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCtt < 1:1907929/51‑1 (MQ=255) tttttACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCtt < 1:2257382/51‑1 (MQ=255) tttttACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTAt < 1:525054/69‑1 (MQ=255) ttttACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAgctgct < 1:1988633/59‑1 (MQ=255) tttACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATg > 1:2985774/1‑63 (MQ=255) tttACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTAtttt < 1:1940514/70‑1 (MQ=255) ttACGCAGGAATGCTGATGGCGCATTCATCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTa > 1:1318287/1‑71 (MQ=255) ttACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTa > 1:2955491/1‑71 (MQ=255) aCGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTAt < 1:2471262/70‑1 (MQ=255) cGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTATTg > 1:2718252/1‑71 (MQ=255) gCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTAt < 1:1659531/68‑1 (MQ=255) aGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTATTGGCa < 1:129540/71‑1 (MQ=255) tgaatgcgccatcagcattcACCTGTCATTCTGTTGGGCTTGCAgc < 1:2171209‑M2/26‑1 (MQ=255) gaatgcgccatcagcattcACCTGTCATTCTGTTGGGCTTGCAgct > 1:1862792‑M2/20‑46 (MQ=255) gaatgcgccatcagcattcACCTGTCATTCTGTTGGGCTTGCAgc > 1:2886937‑M2/20‑45 (MQ=255) GAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTATTGGCAtt < 1:3058929‑M1/71‑1 (MQ=255) TGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTCTg > 1:1679686‑M1/1‑71 (MQ=255) TGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTCTg > 1:3352991‑M1/1‑71 (MQ=255) gcgccatcagcattcACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGc < 1:795968‑M2/36‑1 (MQ=255) GCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTCTgg < 1:2438193‑M1/71‑1 (MQ=255) tGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAgc < 1:1730028/39‑1 (MQ=255) tGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTAtttt < 1:896004/55‑1 (MQ=255) tGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTCTGggc > 1:2554624/1‑71 (MQ=255) aTGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAg > 1:2651838/1‑36 (MQ=255) aTGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTCTGggcgg > 1:960812/1‑71 (MQ=255) gcattcACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTCTGGGCGGCATCg > 1:3685289‑M2/7‑71 (MQ=255) attcACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTCTGGGCGGCATCggg < 1:3748745‑M2/67‑1 (MQ=255) ttcACCTGTCATTCTGTTGGGCTTGCAGCTTCTAAATGCTATTTTTATTGGCATTCTTGGCGGCATCGGGa < 1:167362‑M2/68‑1 (MQ=255) tcACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTc < 1:3420942‑M2/53‑1 (MQ=255) tcACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTc < 1:3218664‑M2/53‑1 (MQ=255) tcACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTc < 1:2308274‑M2/53‑1 (MQ=255) cACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTa < 1:137117‑M2/44‑1 (MQ=255) aCCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTAtttt < 1:1534394/42‑1 (MQ=255) | TTTCTTAATGCGCGTTGCTGCCGTGGGTGGCGTCTGTTTTTACGCAGGAATGCTGATGGCGCATTCACCTGTCATTCTGTTGGGCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTCTGGGCGGCATCGGGA > minE/1396140‑1396273 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |