| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2540138 | 70 (1.350) | 4 (0.090) | 3/90 | NT | 6.0% | coding (663/1017 nt) | rfaJ | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase |
| ? | minE | = 2540152 | 63 (1.380) | coding (677/1017 nt) | rfaJ | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase | |||||
ATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACAAAACACAT > minE/2540082‑2540222 | aTTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGAt > 1:1566600/1‑71 (MQ=255) ttCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGAt > 1:2152195/1‑70 (MQ=255) ttCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGAt > 1:1855541/1‑70 (MQ=255) aTGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATgacat < 1:3339282‑M2/70‑6 (MQ=255) aTGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATgacat < 1:2792455‑M2/70‑6 (MQ=255) tGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACatta < 1:3547257/71‑1 (MQ=255) aGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACattatt < 1:1918766/71‑1 (MQ=255) aGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACattatt > 1:2444504/1‑71 (MQ=255) aGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACattatt < 1:2552004/71‑1 (MQ=255) gTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttt > 1:3165944/1‑71 (MQ=255) gTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttt > 1:815086/1‑71 (MQ=255) gTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttt < 1:1240733/71‑1 (MQ=255) aaaGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAttttt > 1:3364649/1‑71 (MQ=255) aaGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTg > 1:1202679/1‑71 (MQ=255) aaGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTg > 1:1152381/1‑71 (MQ=255) aTAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGcc > 1:2291258/1‑70 (MQ=255) tAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTc < 1:3936585/71‑1 (MQ=255) tAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTc < 1:279288/71‑1 (MQ=255) aTGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGt < 1:474215/71‑1 (MQ=255) aTGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGt < 1:3274993/71‑1 (MQ=255) tGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGt > 1:1356005/1‑70 (MQ=255) gTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTAtttt < 1:2102391/61‑1 (MQ=255) ttATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAg > 1:2014352/1‑70 (MQ=255) tataAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGAt > 1:458605/1‑47 (MQ=255) taAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtac < 1:3834132/70‑1 (MQ=255) aaaTACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtacaa > 1:1493337/1‑71 (MQ=255) aaTACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGc > 1:2463381/1‑57 (MQ=255) aaTACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGc > 1:2518816/1‑57 (MQ=255) aaTACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtacaa < 1:3376461/70‑1 (MQ=255) aTACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtacaata > 1:2237425/1‑71 (MQ=255) tACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGAGATTATTTTTGCCTCGTg < 1:816271/61‑1 (MQ=255) tACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTg < 1:811544/61‑1 (MQ=255) cccTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtacaatacaa > 1:1146816/1‑71 (MQ=255) cccTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtacaatacaa < 1:1034975/71‑1 (MQ=255) cccTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtacaataca < 1:3649019/70‑1 (MQ=255) cccTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtacaataca < 1:1506081/70‑1 (MQ=255) cTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGt < 1:347517/60‑1 (MQ=255) tGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAAtt > 1:767060/1‑70 (MQ=255) tGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAAtt > 1:983746/1‑70 (MQ=255) tGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAAtt > 1:2976203/1‑70 (MQ=255) aTCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTta > 1:628695/1‑70 (MQ=255) aTCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTta > 1:2451260/1‑70 (MQ=255) cAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGt < 1:2388547/51‑1 (MQ=255) cAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGt < 1:3586546/51‑1 (MQ=255) cAGGATGTTATGAATGTCTTACTGAAAGGGATGAAATTATTTTTg > 1:553287/1‑45 (MQ=255) aGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATAc < 1:2975918/70‑1 (MQ=255) aGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATAc < 1:1226071/70‑1 (MQ=255) aGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATAc < 1:3921155/70‑1 (MQ=255) aTGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAAtt < 1:473/71‑1 (MQ=255) aTGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAAtt < 1:3622132/71‑1 (MQ=255) tGTTATGAATGTCTTACTGAAAGGGATGACATTAtttt > 1:2983623/1‑38 (MQ=255) tGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAAtt > 1:3603510/1‑70 (MQ=255) tGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAAt > 1:658521/1‑69 (MQ=255) tATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGa > 1:3423056/1‑45 (MQ=255) aTGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGt < 1:4602/46‑1 (MQ=255) aTGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGt < 1:3593090/46‑1 (MQ=255) tGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtacaatac < 1:1373629/52‑1 (MQ=255) tGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGt > 1:2326045/1‑71 (MQ=255) gAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtac > 1:3515646/1‑46 (MQ=255) tGTCTTACTGAAAGGGATgacattcataacatcctgatcagggtatttataaacattatctttactcat < 1:3117119‑M2/69‑52 (MQ=255) tGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGtacaataca > 1:1675824/1‑49 (MQ=255) gTCTTACTGAAAGGGATgacattcataacatcctgatcaggg < 1:572333‑M2/42‑26 (MQ=255) gTCTTACTGAAAGGGATgacattcataacatcctgatcaggg < 1:3867488‑M2/42‑26 (MQ=255) gTCTTACTGAAAGGGATGACATTATTTTTGCCTCGt < 1:2300504/36‑1 (MQ=255) tCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATA‑AATTTATACAATTaaaa > 1:352403/1‑62 (MQ=255) ttACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTaa > 1:3458984/1‑70 (MQ=255) tACTGAAAGGGATgacattcataacatcctgatcagggtattt < 1:56289‑M2/43‑31 (MQ=255) aCTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTtata > 1:2836724/1‑50 (MQ=255) aCTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAg > 1:2749323/1‑60 (MQ=255) aCTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTaa < 1:2639450/68‑1 (MQ=255) aCTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTaa < 1:3476057/68‑1 (MQ=255) gAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAAt > 1:572419/1‑62 (MQ=255) gAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGAc > 1:3075892/1‑70 (MQ=255) aaaGGGATGACATTATTTTTGGCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACa > 1:3685425/1‑70 (MQ=255) aaaGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTtat < 1:867810/45‑1 (MQ=255) aaaGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTtat < 1:2514970/45‑1 (MQ=255) aaaGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAAt > 1:1714466/1‑61 (MQ=255) aaaGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGAc < 1:943887/69‑1 (MQ=255) aaaGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACaa < 1:2896355/71‑1 (MQ=255) aaaGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACa > 1:641113/1‑70 (MQ=255) aaaGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACa > 1:1988557/1‑70 (MQ=255) aaGGGATGACATTATTTTT‑CCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACaaa > 1:2620335/1‑70 (MQ=255) gggATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACAAAac < 1:1928618/71‑1 (MQ=255) gATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAg > 1:2495301/1‑51 (MQ=255) aTGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACAAAAcaca < 1:1879919/71‑1 (MQ=255) tGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTaaaa > 1:63667/1‑59 (MQ=255) tGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACAAAACACAt > 1:2457629/1‑71 (MQ=255) | ATTCTTATGAGTAAAGATAATGTTTATAAATACCCTGATCAGGATGTTATGAATGTCTTACTGAAAGGGATGACATTATTTTTGCCTCGTGAGTACAATACAATTTATACAATTAAAAGTGAATTAAAAGACAAAACACAT > minE/2540082‑2540222 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |