| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,015,604 | A→G | 16.6% | Y155Y (TAT→TAC) | fumA ← | aerobic Class I fumarate hydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,015,604 | 0 | A | G | 16.6% | 94.3 / 11.4 | 42 | Y155Y (TAT→TAC) | fumA | aerobic Class I fumarate hydratase |
| Reads supporting (aligned to +/- strand): ref base A (21/14); new base G (5/2); total (26/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.90e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCGTCGCCATCAACGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTTATAGACACC > minE/1015539‑1015669 | tcgtcgCCATCAACGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACa > 1:3839346/1‑70 (MQ=255) cgCCATCAACGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATc > 1:1805029/1‑70 (MQ=255) gCCATCAACGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCa < 1:3346520/71‑1 (MQ=255) cATCAACGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAgc > 1:1081303/1‑71 (MQ=255) aTCAACGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAgcg > 1:1238325/1‑71 (MQ=255) cGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGcgcg > 1:881494/1‑71 (MQ=255) cGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGcgcg < 1:2255348/71‑1 (MQ=255) tAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGtttt > 1:1360761/1‑70 (MQ=255) aaaGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGc > 1:2697727/1‑71 (MQ=255) aaaGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGc > 1:2444147/1‑71 (MQ=255) aaGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAg > 1:612707/1‑57 (MQ=255) atcgatcTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGt < 1:1360564/71‑1 (MQ=255) tcgatcTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTa < 1:3520849/71‑1 (MQ=255) cgatcTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAg > 1:474873/1‑71 (MQ=255) cTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAgcg > 1:3163368/1‑69 (MQ=255) cgcTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAgc < 1:3886365/65‑1 (MQ=255) cgcTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGa < 1:3519554/70‑1 (MQ=255) cgcTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGa < 1:3515551/70‑1 (MQ=255) tGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTa < 1:976736/70‑1 (MQ=255) gCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCt > 1:1024815/1‑71 (MQ=255) aGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTc > 1:1783645/1‑71 (MQ=255) aTTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTg > 1:2543854/1‑48 (MQ=255) aTTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCg > 1:1711911/1‑50 (MQ=255) aTTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGa > 1:2169316/1‑51 (MQ=255) tagTGCCGGTGTTGACCTCTTTGTAGATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGata > 1:2766314/3‑71 (MQ=255) tagTGCCGGTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGata > 1:1925298/3‑71 (MQ=255) gTGCCGGTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGatat < 1:3170624/70‑1 (MQ=255) gTGCCGGTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGatat < 1:1847255/70‑1 (MQ=255) gTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGc < 1:3806834/45‑1 (MQ=255) gTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGt < 1:773594/49‑1 (MQ=255) ccGGTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGAtatagg > 1:1684446/1‑68 (MQ=255) cGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTc < 1:3922098/61‑1 (MQ=255) aTTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTa < 1:3442951/52‑1 (MQ=255) ttCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTtata < 1:1956898/71‑1 (MQ=255) cACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCg > 1:3130321/1‑55 (MQ=255) cttcttTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTTATAg > 1:306349/1‑68 (MQ=255) ttcttTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGAt > 1:3238234/1‑44 (MQ=255) tcttTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGATATAGGTGTTATAGACGcc > 1:3695163/1‑71 (MQ=255) tcttTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGATATAGGTGTTATAGACGcc > 1:1308063/1‑71 (MQ=255) tcttTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGatat < 1:3002265/55‑1 (MQ=255) tcttTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTTATAGACAcc > 1:1078024/1‑71 (MQ=255) tttATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTa > 1:2820143/1‑43 (MQ=255) | TCGTCGCCATCAACGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTTATAGACACC > minE/1015539‑1015669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |