Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,259,334 C→T 6.9% Q530Q (CAG→CAA torZ ← trimethylamine N‑oxide reductase system III, catalytic subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,259,3340CT 6.9% 220.9 / 4.8 72Q530Q (CAG→CAAtorZtrimethylamine N‑oxide reductase system III, catalytic subunit
Reads supporting (aligned to +/- strand):  ref base C (40/27);  new base T (2/3);  total (42/30)
Fisher's exact test for biased strand distribution p-value = 6.43e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.03e-01

TTTGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCATTGCGCTCAAACGATG  >  minE/1259265‑1259404
                                                                     |                                                                      
tttGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCt                                                                       <  1:1595917/71‑1 (MQ=255)
  tGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGc                                                                     >  1:3257345/1‑71 (MQ=255)
  tGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGc                                                                     >  1:1436213/1‑71 (MQ=255)
   gAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCt                                                                    >  1:3658702/1‑71 (MQ=255)
      tAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCa                                                                 <  1:3612087/71‑1 (MQ=255)
      tAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCa                                                                 >  1:3782297/1‑71 (MQ=255)
        aTTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATc                                                               >  1:80364/1‑71 (MQ=255)
         ttCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCg                                                              <  1:943781/71‑1 (MQ=255)
         ttCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCg                                                              >  1:430903/1‑71 (MQ=255)
          tCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCgg                                                             >  1:798592/1‑71 (MQ=255)
            cGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTg                                                                      <  1:1684399/60‑1 (MQ=255)
            cGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGc                                                                     >  1:68286/1‑61 (MQ=255)
             gCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATc                                                               >  1:2846398/1‑66 (MQ=255)
              cAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGcaca                                                         <  1:1373352/71‑1 (MQ=255)
              cAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGcac                                                          >  1:3463489/1‑70 (MQ=255)
                   tCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCAt                                                                <  1:1929874/59‑1 (MQ=255)
                   tCGGCAAACACGGCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATg                                                    <  1:1939879/71‑1 (MQ=255)
                    cGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCg                                                              >  1:3119788/1‑60 (MQ=255)
                     ggCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGc                                                   <  1:3449898/70‑1 (MQ=255)
                      gCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTg                                                 <  1:1539223/71‑1 (MQ=255)
                      gCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTg                                                 >  1:576774/1‑71 (MQ=255)
                       cAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTg                                                                      >  1:2655832/1‑49 (MQ=255)
                          acacGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTg                                             <  1:2929217/71‑1 (MQ=255)
                           cacGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGc                                            <  1:544249/71‑1 (MQ=255)
                              gTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCt                                           >  1:2098813/1‑69 (MQ=255)
                              gTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTg                                          >  1:3067295/1‑70 (MQ=255)
                              gTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGt                                         <  1:504385/71‑1 (MQ=255)
                              atCAAAATCATTACGCGCTTCATAGCGTGGCGGCACCACTTGCTTCATCGGCACCAGATGCTGATTACTGt                                         <  1:1807957/70‑1 (MQ=255)
                               tCAAAATCATTACGCGCTTCATAGCGTGGCGGCACCACTTGCTTCATCGGCACCAGATGCTGATTACTGTa                                        <  1:188086/71‑1 (MQ=255)
                                cAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGc                                                   >  1:44713/1‑59 (MQ=255)
                                cAAAATCATTACGCGCTTCATAGCGTGGCGGCACCACTTGCTTCATCGGcacc                                                         >  1:903052/1‑52 (MQ=255)
                                cAAAATCATTACGCGCTTCATAGCGTGGCGGCACCACTTGCTTCATCGGCACCAGATGCTGATTACTGTaa                                       >  1:165247/1‑71 (MQ=255)
                                 aaaaTCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAAt                                      <  1:2587043/71‑1 (MQ=255)
                                 aaaaTCATTACGCGCTTCATAGCGTGGCGGCACCACTTGCTTCATCGGCACCAGATGCTGATTACTGTAAt                                      <  1:337808/71‑1 (MQ=255)
                                  aaaTCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATg                                                    >  1:2273071/1‑56 (MQ=255)
                                  aaaTCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGc                                                   >  1:1347719/1‑57 (MQ=255)
                                  aaaTCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAAt                                      >  1:1249524/1‑70 (MQ=255)
                                   aaTCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACaa                                                        <  1:2557413/51‑1 (MQ=255)
                                    aTCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCAc                                   <  1:470536/71‑1 (MQ=255)
                                    aTCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCAc                                   <  1:1778016/71‑1 (MQ=255)
                                     tCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCAcc                                  >  1:3105599/1‑71 (MQ=255)
                                     tCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCAcc                                  >  1:3372617/1‑71 (MQ=255)
                                     tCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCAcc                                  >  1:513725/1‑71 (MQ=255)
                                      cGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCg                                 >  1:151080/1‑71 (MQ=255)
                                      cGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCg                                 >  1:3200162/1‑71 (MQ=255)
                                      cGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCg                                 >  1:3768493/1‑71 (MQ=255)
                                       gTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCgg                                >  1:455261/1‑71 (MQ=255)
                                       gTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCg                                 >  1:746990/1‑70 (MQ=255)
                                       gTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCg                                 >  1:128098/1‑70 (MQ=255)
                                        ttACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATg                                                    <  1:2040405/50‑1 (MQ=255)
                                          aCGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTc                              <  1:2202681/70‑1 (MQ=255)
                                           cgcgCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCAt                            <  1:1215971/71‑1 (MQ=255)
                                            gcgcTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATc                           >  1:3400514/1‑71 (MQ=255)
                                              gcTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGt                         >  1:3452958/1‑71 (MQ=255)
                                              gcTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGt                         >  1:1666713/1‑71 (MQ=255)
                                               cTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATc                                     <  1:397559/58‑1 (MQ=255)
                                                 tCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGc                                            >  1:1738389/1‑49 (MQ=255)
                                                   aaaTTGCTGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAg                     <  1:921377/70‑1 (MQ=255)
                                                    aaTTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAg                     >  1:1433139/1‑69 (MQ=255)
                                                     aTTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCa                  <  1:1517939/71‑1 (MQ=255)
                                                         cGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCATTgc              >  1:3544148/1‑71 (MQ=255)
                                                            aGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCATTGCGCt           >  1:2405667/1‑71 (MQ=255)
                                                            aGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCATTGCGCt           >  1:3029568/1‑71 (MQ=255)
                                                             gCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCAt                 >  1:3250342/1‑64 (MQ=255)
                                                               aaCAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCa                             <  1:2219828/50‑1 (MQ=255)
                                                               aaCAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCa                  <  1:2682738/61‑1 (MQ=255)
                                                                aCAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCAt                 <  1:1403782/61‑1 (MQ=255)
                                                                 cAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCATTGCGCTCAAAc      >  1:231363/1‑71 (MQ=255)
                                                                 cAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATAACCGGTCATAGTCAAGTCATTGCGCTCaaa       >  1:531696/1‑70 (MQ=255)
                                                                 cAGCCTGCTTCATCGGCACAATATCCTGGTTGCTGTAATCAc                                   >  1:791073/1‑42 (MQ=255)
                                                                   gCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCATTGCGCTCAAACGa    <  1:926415/71‑1 (MQ=255)
                                                                   gCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCATTGCGATCAAACGa    <  1:828043/71‑1 (MQ=255)
                                                                     cTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCATTGCGCTCAAACGAtg  <  1:3004255/71‑1 (MQ=255)
                                                                     cTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCATTGCGCTCAAACGAtg  <  1:2783061/71‑1 (MQ=255)
                                                                     cTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCATTGCGCTCAAACGAtg  <  1:3891486/71‑1 (MQ=255)
                                                                     |                                                                      
TTTGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCATTGCGCTCAAACGATG  >  minE/1259265‑1259404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: