Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,260,297 A→G 8.2% V209V (GTT→GTC torZ ← trimethylamine N‑oxide reductase system III, catalytic subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,260,2970AG 8.2% 165.4 / 5.5 61V209V (GTT→GTCtorZtrimethylamine N‑oxide reductase system III, catalytic subunit
Reads supporting (aligned to +/- strand):  ref base A (27/29);  new base G (3/2);  total (30/31)
Fisher's exact test for biased strand distribution p-value = 6.71e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.29e-01

CCTTGCTCATCGGTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACAT  >  minE/1260229‑1260367
                                                                    |                                                                      
ccTTGCTCATCGGTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAAc                                                                      <  1:2997662/71‑1 (MQ=255)
ccTTGCTCATCGGTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAAc                                                                      <  1:1308261/71‑1 (MQ=255)
 cTTGCTCATCGGTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACcaca                                                                        <  1:2363901/68‑1 (MQ=255)
 cTTGCTCATCGGTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAAcc                                                                     <  1:521928/71‑1 (MQ=255)
   tGCTCATCGGTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAAACTg                                                                   >  1:2343269/1‑71 (MQ=255)
    gCTCATCGGTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTg                                                                   >  1:2399152/1‑70 (MQ=255)
        aTCGGTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGt                                                              <  1:1148274/71‑1 (MQ=255)
        aTCGGTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGt                                                              >  1:1923883/1‑71 (MQ=255)
        aTCGGTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGt                                                              <  1:3346383/71‑1 (MQ=255)
        aTCGGTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGt                                                              <  1:76736/71‑1 (MQ=255)
         tCGGTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGtt                                                             <  1:3332877/71‑1 (MQ=255)
          cGGTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGttt                                                            >  1:2900297/1‑71 (MQ=255)
            gTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGt                                                              <  1:353791/67‑1 (MQ=255)
            gTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTc                                                          >  1:454933/1‑71 (MQ=255)
              aCTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTc                                                          >  1:3041054/1‑69 (MQ=255)
                  cTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAAt                                                    >  1:2222404/1‑71 (MQ=255)
                   tCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACCGCACCACAAcc                                                                     <  1:2565806/53‑1 (MQ=255)
                     cAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTc                                                          <  1:2070739/62‑1 (MQ=255)
                     cAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAg                                                 <  1:3273270/71‑1 (MQ=255)
                     cAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAg                                                 <  1:2138349/71‑1 (MQ=255)
                        gCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTc                                                          <  1:546595/59‑1 (MQ=255)
                        gCAATTTTCAGCGTATTGAGTGGGTTAGCACTCCACAGCACCACGACATCGCTATGTTCCAGCACCAGCgg                                              >  1:1259526/1‑71 (MQ=255)
                          aaTTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCa                                                        >  1:3121765/1‑59 (MQ=255)
                          aaTTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGc                                             >  1:625060/1‑70 (MQ=255)
                             ttttAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCag                                          <  1:619757/70‑1 (MQ=255)
                              tttAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCagg                                         <  1:3096416/70‑1 (MQ=255)
                              tttAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCag                                          >  1:437424/1‑69 (MQ=255)
                               ttAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCaggag                                       >  1:187155/1‑71 (MQ=255)
                                 aaGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCaggagg                                      <  1:2070520/70‑1 (MQ=255)
                                   ggTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCa                                                        <  1:667998/50‑1 (MQ=255)
                                   ggTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCa                                                        <  1:1393863/50‑1 (MQ=255)
                                   ggTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTct                                   >  1:131527/1‑71 (MQ=255)
                                    gTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTc                                    <  1:2303606/69‑1 (MQ=255)
                                       ttCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCt                                                                >  1:399961/1‑38 (MQ=255)
                                       ttCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCt                                                                >  1:3756375/1‑38 (MQ=255)
                                         cAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGtt                             >  1:3410339/1‑71 (MQ=255)
                                         cAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGt                              <  1:3639974/70‑1 (MQ=255)
                                          aGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGtt                             >  1:3742534/1‑70 (MQ=255)
                                           gCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCa                           <  1:2796313/71‑1 (MQ=255)
                                            cGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCa                           <  1:1812133/70‑1 (MQ=255)
                                            cGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCa                           >  1:1677033/1‑70 (MQ=255)
                                               gTTCATTGCCCACAGCACCACAACCTGGCTGTTTTCCAGAAt                                                    <  1:449612/42‑1 (MQ=255)
                                               gTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCagg                                         <  1:1619114/53‑1 (MQ=255)
                                                ttCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTctgctg                               >  1:990780/1‑62 (MQ=255)
                                                 tCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACAcc                     >  1:1263240/1‑71 (MQ=255)
                                                  cATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACTCct                    >  1:129980/1‑71 (MQ=255)
                                                    ttCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCagg                                         <  1:895122/48‑1 (MQ=255)
                                                    ttCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCagg                                         <  1:461562/48‑1 (MQ=255)
                                                     tCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTa                 >  1:2105493/1‑71 (MQ=255)
                                                     tCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTa                 >  1:1426793/1‑71 (MQ=255)
                                                     tCCCCACAGCACCACAACCTGCCTGTTTTCCAGAATCACCGGCCAGGAGGTCTGCTGTTCATACACCTCTa                 >  1:2720775/1‑71 (MQ=255)
                                                      ccccACAGCACCACAACCTGGCTGTTTTCCAGAATCAg                                                 >  1:2683092/1‑38 (MQ=255)
                                                      ccccACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTa                 <  1:1941037/70‑1 (MQ=255)
                                                      ccccACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTa                 <  1:871553/70‑1 (MQ=255)
                                                      ccccACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTa                 <  1:3739683/70‑1 (MQ=255)
                                                       tccACAGCACCACGACATCGCTATGTTCCAGCACCAGCGGCCAACTGGTCTGCTGTTGATaaa                       <  1:3656911/62‑3 (MQ=255)
                                                       tccACAGCACCACGACATCGCTATGTTCCAGCACCAGCGGCCAACTGGTCTGCTGTTGATAAACttc                   <  1:3639044/66‑1 (MQ=255)
                                                        ccACAGCACCACGACATCGCTATGTTCCAGCACCAGCGGCCAACTGGTCTGCTGTTGATaaactt                    >  1:388237/1‑63 (MQ=255)
                                                         cacaGCACCACGACATCGCTATGTTCCAGCACCAGCGGCCAACTGGTCTGCTGTTGATAAACttcac                 >  1:472205/1‑65 (MQ=255)
                                                         cacaGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGt                              >  1:2882729/1‑54 (MQ=255)
                                                         cacaGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAg              >  1:2913386/1‑70 (MQ=255)
                                                         cacaGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAg              >  1:223710/1‑70 (MQ=255)
                                                                 cacaACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTctgc                                 >  1:945875/1‑43 (MQ=255)
                                                                   caACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTctgc                                 >  1:1539500/1‑41 (MQ=255)
                                                                   caACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATa                         >  1:2285047/1‑49 (MQ=255)
                                                                   caACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATa                         >  1:1245523/1‑49 (MQ=255)
                                                                   caACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACcaca   >  1:2305958/1‑71 (MQ=255)
                                                                   caACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACcaca   >  1:2309483/1‑71 (MQ=255)
                                                                    aaCCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACAt  <  1:3347492/71‑1 (MQ=255)
                                                                    |                                                                      
CCTTGCTCATCGGTACTGCTCCAGGCAATTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACAT  >  minE/1260229‑1260367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: