Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,439,471 T→G 9.8% A277A (GCA→GCC) ‡ ompC ← outer membrane porin protein C

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,439,4710TG 9.8% 262.2 / 22.8 102A277A (GCA→GCC) ‡ompCouter membrane porin protein C
Reads supporting (aligned to +/- strand):  ref base T (52/40);  new base G (3/7);  total (55/47)
Fisher's exact test for biased strand distribution p-value = 1.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01

Only 100 of 106 total aligned reads displayed.

CTGCAGGTAAGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGG  >  minE/1439402‑1439540
                                                                     |                                                                     
cTGCAGGTAAGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCtgt                                                                       >  1:3358854/1‑70 (MQ=255)
   cAGGTAAGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCtt                                                                   >  1:465393/1‑71 (MQ=255)
   cAGGTAAGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCtt                                                                   >  1:434528/1‑71 (MQ=255)
   cAGGTAAGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCtt                                                                   >  1:3622126/1‑71 (MQ=255)
   cAGGTAAGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCtt                                                                   >  1:1470464/1‑71 (MQ=255)
     ggtaaGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTg                                                                 >  1:2432084‑M2/6‑71 (MQ=255)
     ggtaaGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTg                                                                 <  1:1808799‑M2/66‑1 (MQ=255)
     ggTAAGCGATGGACGGGCGCAGGCCAAAGTCGAACTGATACTGAGCAACAACTTCAAAGTTTTGGGTTTTg                                                                 <  1:671175/71‑1 (MQ=12)
      gtaaGCCATGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGt                                                                >  1:2553311‑M2/5‑71 (MQ=255)
      gtaaGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGt                                                                >  1:1647389‑M2/5‑71 (MQ=255)
      gtaaGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGt                                                                >  1:3472081‑M2/5‑71 (MQ=255)
       taaGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGtt                                                               <  1:3317240‑M2/68‑1 (MQ=255)
        aaGCGATGGACGGGCGCAGGCCAAAGTCGAACTGATACTGAGCAACAACTTCAAAGTTTTGGGTTTTGt                                                                >  1:3566872/1‑69 (MQ=12)
        aaGCGATGGACGGGCGCAGGCCAAAGTCGAACTGATACTGAGCAACAACTTCAAAGTTTTGGGTTTTGt                                                                >  1:3777063/1‑69 (MQ=12)
        aaGCGATGGACGGGCGCAGGCCAAAGTCGAACTGATACTGAGCAACAACTTCAAAGTTTTGGGTTTTGt                                                                >  1:1591140/1‑69 (MQ=12)
         aGCCAGGGCCGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTc                                                              <  1:1460458‑M2/69‑1 (MQ=255)
         aGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTc                                                              <  1:3164980‑M2/69‑1 (MQ=255)
             aGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGccc                                                          >  1:2357432/1‑70 (MQ=255)
             aGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGc                                                            >  1:1691457/1‑68 (MQ=255)
              gggACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCg                                                             >  1:3157843/1‑66 (MQ=255)
              gggACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCaa                                                        >  1:2678961/1‑71 (MQ=255)
                 acggacgCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAAccc                                                     <  1:3771531/71‑1 (MQ=255)
                  cggacgCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAAccc                                                     <  1:79359/70‑1 (MQ=255)
                     acgCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAgg                                                  >  1:3512753/1‑70 (MQ=255)
                       gCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGcc                                                           >  1:2047331/1‑59 (MQ=255)
                       gCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGaa                                               >  1:3477011/1‑71 (MQ=255)
                        cAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAAc                                              <  1:1950751/71‑1 (MQ=255)
                        cAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAAc                                              <  1:2047919/71‑1 (MQ=255)
                         aGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTc                                                              <  1:3145725/54‑1 (MQ=255)
                         aGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAAcc                                             >  1:2904924/1‑71 (MQ=255)
                          gACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCt                                            <  1:1629197/71‑1 (MQ=255)
                           aCCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTa                                           >  1:3220294/1‑71 (MQ=255)
                           aCCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTa                                           >  1:2061859/1‑71 (MQ=255)
                           aCCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTATTCGCCCAACCCAGGGAACCTa                                           >  1:1071219/1‑71 (MQ=255)
                            ccGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCg                                                             >  1:2651472/1‑52 (MQ=255)
                            ccGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGaa                                               >  1:1765266/1‑66 (MQ=255)
                             cGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTc                                                              <  1:589999/50‑1 (MQ=255)
                             cGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTa                                           <  1:3089718/69‑1 (MQ=255)
                              gAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTAcgc                                        <  1:1510194/71‑1 (MQ=255)
                              aaaGTCGAACTGATACTGAGCAACAACTTCAAAGTTTTGGGtttt                                                                  <  1:898203/44‑1 (MQ=16)
                              aaaGTCGAACTGATACTGAGCAACAACTTCAAAGTTTTGGGtttt                                                                  <  1:241357/44‑1 (MQ=16)
                              aaaGTCGAACTGATACTGAGCAACAACTTCAAAGTTTTGGGTTTTGt                                                                <  1:134462/46‑1 (MQ=19)
                               aaGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCttt                                                                  >  1:3850996/1‑44 (MQ=255)
                               aaGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCttt                                                                  >  1:1918927/1‑44 (MQ=255)
                               aaGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCttt                                                                  >  1:2652899/1‑44 (MQ=255)
                               aaGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGc                                                            >  1:3914051/1‑50 (MQ=255)
                                 gTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAg                                     <  1:3332638/71‑1 (MQ=255)
                                  tCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTg                                                                 <  1:3077257/42‑1 (MQ=255)
                                   cGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGtt                                   >  1:1787420/1‑71 (MQ=255)
                                    gAACTGATACTGAGCAACAACTTCAAAGTTTTGGGTTTTGTTAGcga                                                          <  1:3387140/47‑3 (MQ=12)
                                    gAACTGATACTGAGCAACAACTTCAAAGTTTTGGGTTTTGTTAGcg                                                           <  1:503352/46‑2 (MQ=12)
                                    gAACTGATACTGAGCAACAACTTCAAAGTTTTGGGTTTTGTTAGcg                                                           <  1:1436413/46‑2 (MQ=12)
                                      aCTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTg                                                                 <  1:1482405/38‑1 (MQ=255)
                                      aCTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCg                                >  1:2455338/1‑71 (MQ=255)
                                      aCTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCg                                >  1:520757/1‑71 (MQ=255)
                                      aCTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCAAGGGa                                                >  1:2513961/1‑55 (MQ=255)
                                         ggTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGccc                                                          >  1:3730668/1‑42 (MQ=255)
                                         ggTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGccc                                                          >  1:2243854/1‑42 (MQ=255)
                                         ggTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCa                                                         <  1:3922949/43‑1 (MQ=255)
                                          gTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGt                            <  1:1773293/71‑1 (MQ=255)
                                            aCTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAg                          >  1:3236920/1‑71 (MQ=255)
                                             cTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAgg                         <  1:3461837/71‑1 (MQ=255)
                                             cTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAg                          <  1:646809/70‑1 (MQ=255)
                                             cTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAg                          <  1:2708610/70‑1 (MQ=255)
                                              tGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAgg                         >  1:2575439/1‑70 (MQ=255)
                                                aGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCt                      <  1:2508163/71‑1 (MQ=255)
                                                aGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCt                      <  1:1780378/71‑1 (MQ=255)
                                                aGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCt                      <  1:3467766/71‑1 (MQ=255)
                                                aGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCt                      >  1:1667622/1‑71 (MQ=255)
                                                aGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCt                      >  1:3069065/1‑71 (MQ=255)
                                                  cAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTgg                    <  1:131542/71‑1 (MQ=255)
                                                   aaCAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTggg                   >  1:131755/1‑71 (MQ=255)
                                                    aCAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGgt                  <  1:1860450/71‑1 (MQ=255)
                                                    aCAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGgt                  <  1:3816293/71‑1 (MQ=255)
                                                      aGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGgtg                 >  1:1643527/1‑70 (MQ=255)
                                                       gCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTa               >  1:1328370/1‑71 (MQ=255)
                                                        cTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTa               >  1:425300/1‑70 (MQ=255)
                                                         ttCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTg                             <  1:2224268/55‑1 (MQ=255)
                                                         ttCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACt             >  1:1152085/1‑71 (MQ=255)
                                                         ttCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACt             >  1:1313671/1‑71 (MQ=255)
                                                          tCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACt             >  1:2445861/1‑70 (MQ=255)
                                                          tCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACt             >  1:1131851/1‑70 (MQ=255)
                                                          tCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACt             >  1:1644105/1‑70 (MQ=255)
                                                           cGAAGTTCTGTGCTTTGTTCGCCCAACCCAGTGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACt             <  1:1263573/69‑1 (MQ=255)
                                                           cGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACt             >  1:3770913/1‑69 (MQ=255)
                                                           cGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACt             <  1:459931/69‑1 (MQ=255)
                                                           cGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACt             >  1:2298744/1‑69 (MQ=255)
                                                           cGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTg            <  1:2606486/70‑1 (MQ=255)
                                                            gAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGag          <  1:648362/71‑1 (MQ=255)
                                                             aaGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGag          >  1:568585/1‑70 (MQ=255)
                                                              aGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGagca        <  1:1035734/71‑1 (MQ=255)
                                                               gTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGagcag       >  1:926620/1‑71 (MQ=255)
                                                                ttCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCg                                <  1:2503139/45‑1 (MQ=255)
                                                                ttCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCt                      <  1:321322/55‑1 (MQ=255)
                                                                ttCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGagcagc      <  1:1756390/71‑1 (MQ=255)
                                                                 tCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGagcagc      >  1:75414/1‑70 (MQ=255)
                                                                  cTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGcc     <  1:707176/70‑1 (MQ=255)
                                                                   tgtgCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAg   >  1:2779218/1‑71 (MQ=255)
                                                                   agtgCTTTGTTCGCCCAACCCAGGGAACCTACGCGa                                      >  1:2715298/2‑36 (MQ=255)
                                                                     tgCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAgg  <  1:3789678/70‑1 (MQ=255)
                                                                     |                                                                     
CTGCAGGTAAGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTTCGCCCAACCCAGGGAACCTACGCGAGTTGCGTTGTAGGTCTGGGTGTACTGAGCAGCCAGG  >  minE/1439402‑1439540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: