| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,502,847 | A→T | 52.3% | intergenic (‑220/‑700) | lrhA ← / → yfbQ | DNA‑binding transcriptional repressor/predicted aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,502,847 | 0 | A | T | 52.3% | 11.0 / 120.6 | 86 | intergenic (‑220/‑700) | lrhA/yfbQ | DNA‑binding transcriptional repressor/predicted aminotransferase |
| Reads supporting (aligned to +/- strand): ref base A (18/23); new base T (21/24); total (39/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.31e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
ACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTC > minE/1502779‑1502916 | acaTTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATAACTTCAGGGATCGCATATCTATTAAGTTa > 1:290752/1‑71 (MQ=255) caTTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGATac > 1:3361709/1‑71 (MQ=255) aTTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTact < 1:2204028/71‑1 (MQ=255) aTTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTact > 1:125053/1‑71 (MQ=255) aTTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGATact > 1:1647082/1‑71 (MQ=255) aTTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGATact < 1:1260156/71‑1 (MQ=255) aTTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGATact > 1:2594986/1‑71 (MQ=255) aTTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGATact < 1:1421115/71‑1 (MQ=255) ttGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGATact < 1:3049713/70‑1 (MQ=255) ttGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGATact > 1:1483142/1‑70 (MQ=255) gTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactcac > 1:3662917/1‑71 (MQ=255) ttCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactcact < 1:3646788/71‑1 (MQ=255) cGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCActct < 1:1806649/70‑1 (MQ=255) cGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGATACTCACTCtt < 1:43923/71‑1 (MQ=255) ttATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCtttt < 1:3248270/71‑1 (MQ=255) tataATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCtttt < 1:3243611/70‑1 (MQ=255) taATGCCTGAAGTAGATCACAGAATATACCTTCAGGGATCGCATATCTATTAAGTTACTCActct < 1:1379056/65‑1 (MQ=255) aaTGCCTGAAGTAGATCACAAAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTAt > 1:3083605/1‑71 (MQ=255) aTGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGATACTCACTCTTTTCTAtt < 1:145020/71‑1 (MQ=255) tGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTAttt < 1:1967258/71‑1 (MQ=255) tGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTAtt > 1:1086128/1‑70 (MQ=255) ccTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTAt < 1:887947/71‑1 (MQ=255) ccTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGATACTCACTCTTTTCTATTTAt < 1:2050077/71‑1 (MQ=255) tGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGATACTCACTCTTTTCTATTTATGa > 1:2947886/1‑71 (MQ=255) gAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGa > 1:1069775/1‑70 (MQ=255) aaGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCtttt > 1:3916375/1‑59 (MQ=255) aaGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCt > 1:652395/1‑61 (MQ=255) aaGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGATACTCACTCTTTTCTATTTATGACa > 1:3356718/1‑71 (MQ=255) tAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgc > 1:3392364/1‑71 (MQ=255) tAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGATACTCACTCtttt < 1:2437684/56‑1 (MQ=255) gATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTc < 1:736028/55‑1 (MQ=255) gATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgcgc < 1:367657/71‑1 (MQ=255) tCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgcgc > 1:1637024/1‑69 (MQ=255) tCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgcgc > 1:1734473/1‑69 (MQ=255) cacaGAATATATCTTCAGGGATCGCATATCTATTAAGa > 1:3629940/1‑38 (MQ=255) cacaGAATATATCTTCAGGGATCGCATATCTATTAAGa > 1:3857459/1‑38 (MQ=255) cacaGAATATATCTTCAGGGATCGCATATCTATTAAGATactcact > 1:2485460/1‑46 (MQ=255) acaGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCgtgt < 1:1614253/71‑1 (MQ=255) acaGAATATATCTTCAGGGATCGCATATCTATTAAGATACTCACTCtt < 1:1970371/48‑1 (MQ=255) acaGAATATATCTTCAGGGATCGCATATCTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCgtgt < 1:3354020/71‑1 (MQ=255) caGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGtt < 1:2568727/71‑1 (MQ=255) aGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgc > 1:788554/1‑63 (MQ=255) aGAATATATCTTCAGGGATCGCATATCTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGttt > 1:3162855/1‑71 (MQ=255) gAATATATCTTCAGGGATCGCATATCTATTAAGATACTCACTCtt < 1:452683/45‑1 (MQ=255) aaTATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTAtt < 1:3274576/51‑1 (MQ=255) aaTATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTg > 1:2616767/1‑70 (MQ=255) aaTATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGt < 1:1289778/71‑1 (MQ=255) aaTATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGt < 1:2220856/71‑1 (MQ=255) tatatCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGtat < 1:3171883/71‑1 (MQ=255) tatatCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGta > 1:1159543/1‑70 (MQ=255) tatCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGtata > 1:2760150/1‑70 (MQ=255) tatCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGtat > 1:1819528/1‑69 (MQ=255) tatCTTCAGGGATCGCATATCTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaa < 1:1789530/71‑1 (MQ=255) atCTTCAGGGATCGCATATCTATTAAGATACTCACTCTTTTCTAttt < 1:2790954/47‑1 (MQ=255) atCTTCAGGGATCGCATATCTATTAAGATACTCACTCTTTTCTAttt < 1:2740408/47‑1 (MQ=255) tCTTCAGGGATCGCATATCTATTAAGATACTCACTCtt < 1:3123407/38‑1 (MQ=255) tCTTCAGGGATCGCATATCTATTAAGATACTCACTCtt < 1:3143179/38‑1 (MQ=255) ttCAGGGATCGCATATCTATTAAGATACTCACTCTTTTCt < 1:2487958/40‑1 (MQ=255) ttCAGGGATCGCATATCTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGtat < 1:2325923/65‑1 (MQ=255) cAGCGATCGCATATCTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgta > 1:3533527/1‑70 (MQ=255) aGGGATCGCATATCTATTAAGATACTCACTCTTTTCTAt < 1:1337096/39‑1 (MQ=255) aGGGATCGCATATCTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaaa > 1:1191432/1‑71 (MQ=255) gggATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaaat < 1:2668933/71‑1 (MQ=255) gggATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaa < 1:978881/69‑1 (MQ=255) ggATCGCATATCTATTAAGATACTCACTCTTTTCTATTTATGACATgc > 1:483415/1‑48 (MQ=255) ggATCGCATATCTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatg > 1:3882551/1‑65 (MQ=255) gATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATaaatgtaaatgt < 1:798779/71‑1 (MQ=255) gATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATaaatgtaaatgt < 1:2759608/71‑1 (MQ=255) aTCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATaaatgtaaatgt < 1:2368089/70‑1 (MQ=255) aTCGCATATCTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaaa < 1:3605950/67‑1 (MQ=255) tCGCATATCTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATaaatgtaaatgt < 1:2492742/69‑1 (MQ=255) cGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAg > 1:877265/1‑71 (MQ=255) gCATATCTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaa < 1:3048652/63‑1 (MQ=255) gCATATCTACTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaaatg < 1:282305/66‑1 (MQ=255) atatCTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTcc > 1:3367362/1‑71 (MQ=255) tatCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaaat < 1:1911610/62‑1 (MQ=255) tatCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCt > 1:2487772/1‑71 (MQ=255) tatCTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCt > 1:2673168/1‑71 (MQ=255) atCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCtt > 1:2690856/1‑71 (MQ=255) tCTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGtat > 1:3112030/1‑50 (MQ=255) cTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCgtgt > 1:1154437/1‑43 (MQ=255) cTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTg > 1:2489608/1‑70 (MQ=255) tATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGtt > 1:3544273/1‑43 (MQ=255) aTTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTc > 1:2363355/1‑71 (MQ=255) ttAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGta < 1:1056273/45‑1 (MQ=255) ttAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTc > 1:583819/1‑70 (MQ=255) tAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGt < 1:2681355/67‑1 (MQ=255) gATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCActc < 1:3462036/71‑1 (MQ=255) | ACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGATACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTC > minE/1502779‑1502916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |