| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,513,018 | T→C | 21.4% | intergenic (+141/+291) | pta → / ← ubiX | phosphate acetyltransferase/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,513,018 | 0 | T | C | 21.4% | 106.7 / 26.1 | 56 | intergenic (+141/+291) | pta/ubiX | phosphate acetyltransferase/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| Reads supporting (aligned to +/- strand): ref base T (22/22); new base C (8/4); total (30/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 | |||||||||||
CTTAATTTGCATTAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTAT > minE/1512952‑1513084 | ctTAATTTGCATTAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCCCACt > 1:2078111/1‑71 (MQ=255) ttAATTTGCATTAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACtt > 1:583963/1‑71 (MQ=255) aaTTTGCATTAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACttt < 1:3339297/70‑1 (MQ=255) aaTTTGCATTAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACttt < 1:1543880/70‑1 (MQ=255) aTTTGCATTAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTg < 1:317096/70‑1 (MQ=255) tttGCATTAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCCCACTTTGCa < 1:3438293/71‑1 (MQ=255) tGCATTAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATa > 1:1221119/1‑71 (MQ=255) tGCATTAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATa > 1:1560243/1‑71 (MQ=255) gCATTAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCCCACTTTGCATAc > 1:1288176/1‑71 (MQ=255) cATTAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACt < 1:420565/71‑1 (MQ=255) ttAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTc < 1:313807/71‑1 (MQ=255) tAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACttt > 1:1568517/1‑61 (MQ=255) tAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCCCACTTTGCATACttac > 1:890272/1‑69 (MQ=255) aaTCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCCCACTTTGCATACttac > 1:1826536/1‑68 (MQ=255) aTCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGAGCCATCCCACTTTGCATACTTACCa > 1:2780713/1‑71 (MQ=255) tCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCAc > 1:1620607/1‑71 (MQ=255) tttCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCCCACTTTGCATACTTACCACttt > 1:1063585/1‑71 (MQ=255) cTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCCCACTTTGCATACTTACCACt < 1:86305/66‑1 (MQ=255) tGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCCCACTTTg < 1:3321386/52‑1 (MQ=255) tGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCCCACTTTg < 1:3231668/52‑1 (MQ=255) gATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCAt < 1:600866/54‑1 (MQ=255) gATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCCCACTTTGCATACTTACCACttt > 1:2442505/1‑66 (MQ=255) aTTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTg < 1:3447466/50‑1 (MQ=255) aTTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACt < 1:2178333/63‑1 (MQ=255) aTTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACa > 1:3884080/1‑71 (MQ=255) aTCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATaa > 1:1989703/1‑71 (MQ=255) tCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTg < 1:1056442/46‑1 (MQ=255) tCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCa > 1:943068/1‑48 (MQ=255) tCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTa > 1:1412050/1‑65 (MQ=255) cTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACtt < 1:1274920/59‑1 (MQ=255) tGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCt > 1:922039/1‑71 (MQ=255) gCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTccc > 1:1668442/1‑52 (MQ=255) gCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTccc > 1:1323435/1‑52 (MQ=255) gCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCt > 1:2249481/1‑70 (MQ=255) cTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTc < 1:2778936/70‑1 (MQ=255) cTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCa < 1:3801586/71‑1 (MQ=255) cTTAACTGCGCTGCATCAATGAATTGCGCCATCCCACTTTGCATAc > 1:2454610/1‑46 (MQ=255) aaCTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGt > 1:289583/1‑71 (MQ=255) aaCTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGt > 1:157099/1‑71 (MQ=255) tGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTc > 1:1820529/1‑64 (MQ=255) gcTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAAt < 1:2198801/71‑1 (MQ=255) tGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATgg > 1:1426430/1‑71 (MQ=255) tGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATg > 1:140645/1‑70 (MQ=255) gCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAAcc > 1:3365218/1‑55 (MQ=255) aaTGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGtt < 1:242317/42‑1 (MQ=255) aaTGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGt < 1:691328/41‑1 (MQ=255) aaTGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGt < 1:991445/41‑1 (MQ=255) tGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTa > 1:1230194/1‑41 (MQ=255) tGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTa < 1:1579425/71‑1 (MQ=255) tGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTG‑AAATGGCTTTTTTAt < 1:2121785/71‑1 (MQ=255) aaTTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTAtg > 1:2142166/1‑71 (MQ=255) aaTTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTAt < 1:2576565/70‑1 (MQ=255) ttGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTAtgtt < 1:813573/71‑1 (MQ=255) ttGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGCCTTTTTTAtgtt < 1:2690014/71‑1 (MQ=255) cgcCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTAtgttgt < 1:149284/70‑1 (MQ=255) cATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTAt > 1:1322456/1‑71 (MQ=255) tctcACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTAtg < 1:3524969/61‑1 (MQ=255) | CTTAATTTGCATTAATCCTTTCTGATTATCTTGCTTAACTGCGCTGCATCAATGAATTGCGCCATCTCACTTTGCATACTTCCCACTTTGTTACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTAT > minE/1512952‑1513084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |