Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,716,814 T→G 10.4% intergenic (+72/+126) yphH → / ← glyA predicted DNA‑binding transcriptional regulator/serine hydroxymethyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,716,8140TG10.4% 179.5 / 17.2 77intergenic (+72/+126)yphH/glyApredicted DNA‑binding transcriptional regulator/serine hydroxymethyltransferase
Reads supporting (aligned to +/- strand):  ref base T (30/39);  new base G (3/5);  total (33/44)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01

TAACGTAGAAAGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATAAGGC  >  minE/1716751‑1716882
                                                               |                                                                     
tAACGTAGAAAGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTa                                                                <  1:734969/71‑1 (MQ=255)
 aaCGTAGAAAGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTAt                                                               >  1:1550947/1‑71 (MQ=255)
    gTAGAAAGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAg                                                            <  1:2696502/71‑1 (MQ=255)
     tAGAAAGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAgg                                                           >  1:1805281/1‑71 (MQ=255)
          aGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTa                                                       >  1:3894299/1‑70 (MQ=255)
               tCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTaca                                                     >  1:2114441/1‑67 (MQ=255)
               tCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACg                                                   >  1:1626415/1‑69 (MQ=255)
                cccGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTa                                                                      <  1:1932476/49‑1 (MQ=255)
                cccGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACgg                                                  <  1:1534404/69‑1 (MQ=255)
                 ccGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTa                                                                      >  1:1724852/1‑48 (MQ=255)
                 ccGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACg                                                   >  1:3714221/1‑67 (MQ=255)
                  cGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGAt                                             >  1:2109193/1‑71 (MQ=255)
                   gaaggaagCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGAtt                                            >  1:908025/1‑71 (MQ=255)
                    aaggaagCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTg                                           <  1:3069839/71‑1 (MQ=255)
                     aggaagCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGgaga                                              >  1:2899006/1‑67 (MQ=255)
                     aggaagCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTg                                           >  1:3893846/1‑70 (MQ=255)
                         agCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTacac                                                    <  1:177636/58‑1 (MQ=255)
                           ccTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAatata                                    <  1:390253/71‑1 (MQ=255)
                             ttGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCtt                                                                 <  1:3414291/41‑1 (MQ=255)
                             ttGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACg                                                   <  1:2184039/55‑1 (MQ=255)
                               gatgatCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAata                                      >  1:215936/1‑65 (MQ=255)
                                atgatCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGaa                               <  1:1686696/71‑1 (MQ=255)
                                atgatCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGa                                <  1:2902147/70‑1 (MQ=255)
                                 tgatCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCa                                                             >  1:1382484/1‑41 (MQ=255)
                                 tgatCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAAt                              <  1:3394466/71‑1 (MQ=255)
                                   atCATAAACGAAAAATTGCCTGATGCGCTACGCTTa                                                                >  1:396768/1‑36 (MQ=255)
                                   atCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATAtt                                  <  1:3312726/65‑1 (MQ=255)
                                   atCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAAttt                            >  1:3644204/1‑71 (MQ=255)
                                    tCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGgaga                                              >  1:3415532/1‑52 (MQ=255)
                                    tCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGgag                                                <  1:3756696/51‑1 (MQ=255)
                                    tCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTg                           >  1:205316/1‑71 (MQ=255)
                                     cATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAAtt                             <  1:1567423/68‑1 (MQ=255)
                                      aTAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGc                          >  1:2747197/1‑70 (MQ=255)
                                         aaCGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGga                                                 <  1:3535926/45‑1 (MQ=255)
                                         aaCGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCa                                         <  1:2641892/52‑1 (MQ=255)
                                          aCGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAatata                                    <  1:2154115/56‑1 (MQ=255)
                                          aCGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAatata                                    <  1:1557983/56‑1 (MQ=255)
                                          aCGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGt                     >  1:2554609/1‑71 (MQ=255)
                                           cGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGtt                    >  1:3195851/1‑71 (MQ=255)
                                           cGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGtt                    >  1:1456999/1‑71 (MQ=255)
                                             aaaaaTTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAAt                              <  1:1120278/59‑1 (MQ=255)
                                              caaaTTGCCTGATGCGCTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTg                 <  1:2660934/70‑1 (MQ=11)
                                              aaaaTTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTg                 >  1:1727867/1‑71 (MQ=255)
                                              aaaaTTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTg                 <  1:2893220/71‑1 (MQ=255)
                                               agcttGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTg                 <  1:3602840/67‑1 (MQ=11)
                                               aaaTTGCCTGATGCGCTGCGCTTATCAGGCCTACAAGTTGAATTGCAATTTATTGAAttt                            >  1:3942993/1‑60 (MQ=1)
                                               aaaTTGCCTGATGCGCTGCGCTTATCAGGCCTACAAGTTGAATTGCAATTTATTGAATTTGCACATTTTTg                 <  1:1597560/71‑1 (MQ=2)
                                               aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGt                <  1:1290110/71‑1 (MQ=255)
                                                gcttGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTg                 >  1:3071000/3‑69 (MQ=11)
                                                aaTTGCCTGATGCGCTGCGCTTATCAGGCCTACAAGTTGAATTGCAATTTATTGAATTTGCACATTTTTGt                <  1:3293701/71‑1 (MQ=0)
                                                aaTTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTa               <  1:2306066/71‑1 (MQ=255)
                                                aaTTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTa               <  1:2052954/71‑1 (MQ=255)
                                                 cttGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAg              <  1:1647948/70‑1 (MQ=11)
                                                 cttGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAg              <  1:1199022/70‑1 (MQ=11)
                                                 cttGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAg              <  1:198412/70‑1 (MQ=11)
                                                  ttGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAgg             <  1:2345146/71‑1 (MQ=255)
                                                  ttGCCTGATGCGCTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAgg             <  1:1777636/71‑1 (MQ=11)
                                                    gCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGcc           >  1:533538/1‑71 (MQ=255)
                                                    gCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGcc           >  1:318986/1‑71 (MQ=255)
                                                      cTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCgg         <  1:2518958/71‑1 (MQ=255)
                                                      cTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCg          >  1:1166864/1‑70 (MQ=255)
                                                       tGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGa        >  1:896482/1‑71 (MQ=11)
                                                        gATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAatata                                    >  1:2388512/1‑42 (MQ=255)
                                                        gATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGa        >  1:2193709/1‑70 (MQ=11)
                                                         aTGCGCTACGCTTATCAGGCCTACACGGAGATTGCa                                         <  1:3548242/36‑1 (MQ=255)
                                                         aTGCGCTACGCTTATCAGGCCTACACGGAGATTGCa                                         <  1:3163549/36‑1 (MQ=255)
                                                         aTGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGAt       <  1:1708868/70‑1 (MQ=255)
                                                         aTGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGAt       >  1:1539611/1‑70 (MQ=255)
                                                         aTGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATa      <  1:3632001/71‑1 (MQ=255)
                                                         aTGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATa      <  1:3098876/71‑1 (MQ=255)
                                                         aTGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGAt       <  1:2435653/70‑1 (MQ=11)
                                                          tGCGCTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAGGACGGAt       >  1:83255/1‑69 (MQ=11)
                                                           gcgcTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTg                 <  1:1786627/58‑1 (MQ=255)
                                                            cgcTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAGGACGGATAAg    <  1:920009/70‑1 (MQ=11)
                                                             gcTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATAAGGc  <  1:3736786/71‑1 (MQ=255)
                                                             gcTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATAAGGc  <  1:2621248/71‑1 (MQ=255)
                                                             gcTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATAAGGc  >  1:2081729/1‑71 (MQ=255)
                                                               tACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATAAg    >  1:3572999/1‑67 (MQ=255)
                                                               |                                                                     
TAACGTAGAAAGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATAAGGC  >  minE/1716751‑1716882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: