Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,837,474 G→C 6.5% I315M (ATC→ATG nlpD ← predicted outer membrane lipoprotein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,837,4740GC 6.5% 185.3 / 2.8 61I315M (ATC→ATGnlpDpredicted outer membrane lipoprotein
Reads supporting (aligned to +/- strand):  ref base G (23/34);  new base C (2/2);  total (25/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.63e-01

TGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGC  >  minE/1837409‑1837539
                                                                 |                                                                 
tgttCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAAt                                                              >  1:2945745/1‑71 (MQ=255)
  ttCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCa                                                            <  1:2780036/71‑1 (MQ=255)
  ttCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCa                                                            <  1:1513270/71‑1 (MQ=255)
       ggACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATATTCAGATTa                                                       <  1:2477886/71‑1 (MQ=255)
        gACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTAc                                                      <  1:1708500/71‑1 (MQ=255)
            aGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTtgatg                                                                   <  1:1079287/54‑1 (MQ=255)
            aGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTa                                                  <  1:2449955/71‑1 (MQ=255)
             gCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTtgatga                                                                  <  1:1735045/54‑1 (MQ=255)
             gCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAg                                                 >  1:3641026/1‑71 (MQ=255)
              cATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACAGTAGc                                                >  1:1810632/1‑71 (MQ=255)
               atcgtgtCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATCATGATGAGATTACCGTAGcc                                               <  1:287334/68‑1 (MQ=255)
                  gtgtCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATaa                                                               >  1:2266130/1‑52 (MQ=255)
                  gtgtCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTATAATCATGATGAGATTACCGTAGCcacg                                            <  1:83117/71‑1 (MQ=255)
                   tgtCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTAc                                                      <  1:1774504/60‑1 (MQ=255)
                     tcattATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATCATGATGAGATTACCGTAGCCACGCAg                                         >  1:2101558/4‑71 (MQ=255)
                     tCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTa                                                       <  1:3163641/57‑1 (MQ=255)
                     tCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCa                                          <  1:2246373/70‑1 (MQ=255)
                     tCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCa                                          >  1:670465/1‑70 (MQ=255)
                         tATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAAt                                                              <  1:3247433/46‑1 (MQ=255)
                         tATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATCATGATGAGATTACCGTAGCCACGCAgctgg                                     >  1:288756/1‑68 (MQ=255)
                          aTGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCa                                                            >  1:3081708/1‑47 (MQ=255)
                           tGGGCGTAGGCACTCAGGTAATCATCATTATGTTTTATGATAATCAGATTACCg                                                    <  1:1727758/54‑1 (MQ=255)
                           tGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGtt                                   <  1:750420/71‑1 (MQ=255)
                           tGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGt                                    <  1:3286115/70‑1 (MQ=255)
                            gggCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTAcc                                                     >  1:2829722/1‑52 (MQ=255)
                             ggCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTa                                  <  1:3128388/70‑1 (MQ=255)
                             ggCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTa                                  <  1:2046195/70‑1 (MQ=255)
                             ggCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTAc                                 <  1:833221/71‑1 (MQ=255)
                             ggCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTAc                                 <  1:687821/71‑1 (MQ=255)
                              gCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTAc                                 >  1:2730153/1‑70 (MQ=255)
                               cGTAGGCACTCATGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTAc                                 >  1:1820492/1‑69 (MQ=255)
                                   ggCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGc                             >  1:2462040/1‑69 (MQ=255)
                                    gCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATa                          <  1:1055642/71‑1 (MQ=255)
                                    gCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATa                          <  1:1534082/71‑1 (MQ=255)
                                      aCTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGt                                                   <  1:1516067/44‑1 (MQ=255)
                                      aCTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGt                                    <  1:2787297/59‑1 (MQ=255)
                                      aCTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATaaa                        <  1:2676144/71‑1 (MQ=255)
                                        tCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATaa                         <  1:516533/68‑1 (MQ=255)
                                        tCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAaac                       >  1:3068424/1‑70 (MQ=255)
                                          aGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAaacaac                    >  1:378996/1‑71 (MQ=255)
                                          aGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAaacaa                     <  1:1070597/70‑1 (MQ=255)
                                          aGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAaaca                      <  1:75407/69‑1 (MQ=255)
                                          aGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAaaca                      <  1:1767053/69‑1 (MQ=255)
                                             tAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAaac                       <  1:945665/65‑1 (MQ=255)
                                              aaTCATCATTATGTTTGATGATAATCAGATTACCGTAGc                                                <  1:2715970/39‑1 (MQ=255)
                                              aaTCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCgg                >  1:1478642/1‑71 (MQ=255)
                                              aaTCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCgg                >  1:1665630/1‑71 (MQ=255)
                                              aaTCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCgg                >  1:2244393/1‑71 (MQ=255)
                                               atcatcATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAaacaa                     <  1:3049118/65‑1 (MQ=255)
                                               atcatcATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCgg                <  1:3259269/70‑1 (MQ=255)
                                                tcatcaTTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGt                                    <  1:2468349/49‑1 (MQ=255)
                                                 catcatTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCa             >  1:678726/1‑71 (MQ=255)
                                                  atcatTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGt                                    >  1:2459048/1‑47 (MQ=255)
                                                  atcatTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAAcgcg                 >  1:1814366/1‑66 (MQ=255)
                                                   tcatTATGTTTGATGATAATCAGATTACCGTAGCCGCGCa                                          <  1:1202875/40‑1 (MQ=255)
                                                    catTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCt          >  1:1103903/1‑71 (MQ=255)
                                                     atTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCt          <  1:1718874/70‑1 (MQ=255)
                                                       tATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCg       >  1:1840381/1‑71 (MQ=255)
                                                        aTGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAaacaa                     >  1:1266913/1‑56 (MQ=255)
                                                         tGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAaacaac                    >  1:3198838/1‑56 (MQ=255)
                                                         tGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGt     <  1:2668504/71‑1 (MQ=255)
                                                         tGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGt     <  1:2908566/71‑1 (MQ=255)
                                                          gTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTc    >  1:3164968/1‑71 (MQ=255)
                                                             tgatgaTAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTcgc  <  1:537095/70‑1 (MQ=255)
                                                                 |                                                                 
TGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGC  >  minE/1837409‑1837539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: