| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,921,110 | T→C | 35.9% | S648G (AGC→GGC) | aas ← | fused 2‑acylglycerophospho‑ethanolamine acyl transferase and acyl‑acyl carrier protein synthetase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,921,110 | 0 | T | C | 35.9% | 84.3 / 89.1 | 92 | S648G (AGC→GGC) | aas | fused 2‑acylglycerophospho‑ethanolamine acyl transferase and acyl‑acyl carrier protein synthetase |
| Reads supporting (aligned to +/- strand): ref base T (27/32); new base C (17/16); total (44/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.66e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.51e-01 | |||||||||||
GCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTCCACCATTTCCAGC > minE/1921041‑1921177 | gCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGctc > 1:73257/1‑71 (MQ=255)gCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGctc > 1:3025043/1‑71 (MQ=255)gCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGct < 1:3024600/70‑1 (MQ=255) cAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATctctta < 1:2405209/71‑3 (MQ=255) aaCTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCtt < 1:2344627/71‑1 (MQ=255) aaCTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCtt < 1:1086587/71‑1 (MQ=255) aCTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCtt > 1:1340861/1‑70 (MQ=255) aCTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCtt > 1:3677490/1‑70 (MQ=255) aCTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTa < 1:2381109/71‑1 (MQ=255) cTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTaa > 1:1995249/1‑71 (MQ=255) cTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTaa > 1:3613381/1‑71 (MQ=255) cTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTaa < 1:505310/71‑1 (MQ=255) aTCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCg > 1:3430739/1‑71 (MQ=255) aTCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCg > 1:802348/1‑71 (MQ=255) gcgcgTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCa < 1:876166/70‑1 (MQ=255) gcgcgTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAg > 1:2813440/1‑71 (MQ=255) gcgTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTg > 1:711127/1‑71 (MQ=255) cAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGc < 1:1219735/69‑1 (MQ=255) cAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCAt > 1:2689556/1‑71 (MQ=255) aGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCa < 1:79006/69‑1 (MQ=255) aGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATg > 1:174723/1‑71 (MQ=255) tCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTa < 1:821568/54‑1 (MQ=255) tCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTa < 1:1654462/54‑1 (MQ=255) tCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTa < 1:1727696/54‑1 (MQ=255) gTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAAt > 1:84397/1‑54 (MQ=255) gTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATg > 1:648093/1‑66 (MQ=255) gTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACt < 1:3392458/70‑1 (MQ=255) aTCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACt > 1:3153158/1‑67 (MQ=255) aTCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTAt > 1:553816/1‑71 (MQ=255) tCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTAt < 1:2546471/70‑1 (MQ=255) gtggtgAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCa < 1:559526/57‑1 (MQ=255) gtggtgAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCa < 1:3231340/57‑1 (MQ=255) tggtgAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTg < 1:2677465/69‑1 (MQ=255) tggtgAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCAt > 1:1473424/1‑57 (MQ=255) tggtgAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATc > 1:276060/1‑67 (MQ=255) tggtgAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATc > 1:116108/1‑67 (MQ=255) tggtgAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTg < 1:2562495/69‑1 (MQ=255) tggtgAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTg < 1:1698049/69‑1 (MQ=255) gAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGaaa > 1:217460/1‑71 (MQ=255) aaaaGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCg < 1:3809105/43‑1 (MQ=255) aaaaGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTg < 1:543168/64‑1 (MQ=255) aaaaGCACCAGTGCCTCGCCTTT‑CTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTg < 1:1173012/63‑1 (MQ=255) aaaGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAaca > 1:353833/1‑71 (MQ=255) aaaGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAaca > 1:3102209/1‑71 (MQ=255) aaaGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAaca > 1:1840098/1‑71 (MQ=255) aaaGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAac < 1:1316407/70‑1 (MQ=255) aaaGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTCAATCGCAGTGGCATGGACTTTATCTGCCGAAac < 1:1589723/70‑1 (MQ=255) aGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACAcc < 1:1992213/71‑1 (MQ=255) aGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACAcc < 1:1308268/71‑1 (MQ=255) gCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCa < 1:3509101/71‑1 (MQ=255) gCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCa < 1:374042/71‑1 (MQ=255) cACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAAt > 1:1237405/1‑36 (MQ=255) cACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAAt > 1:3711633/1‑36 (MQ=255) cACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACAcc > 1:3563187/1‑69 (MQ=255) cAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCaa < 1:2398951/68‑1 (MQ=255) cAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTg > 1:792197/1‑71 (MQ=255) cAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTg > 1:1831719/1‑71 (MQ=255) aGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGc < 1:256560/71‑1 (MQ=255) aGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGc < 1:1462917/71‑1 (MQ=255) gTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCATTGGCATGGACTTTATCTg < 1:629658/54‑1 (MQ=255) gTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGc > 1:1080390/1‑70 (MQ=255) gTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGc > 1:2889844/1‑70 (MQ=255) gTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTGGCGa < 1:2691287/58‑1 (MQ=255) gTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGcc < 1:3596863/71‑1 (MQ=255) gCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAg > 1:1518789/1‑71 (MQ=255) ccTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAgt < 1:1637560/71‑1 (MQ=255) tCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAgttg > 1:629014/1‑71 (MQ=255) tCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTg > 1:602468/1‑49 (MQ=255) cGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGTATGGACTTTATCTGGCGAAACACCAAGTGCCAgttg > 1:1611417/1‑70 (MQ=255) cGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTgg > 1:2034996/1‑49 (MQ=255) cGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACAcc < 1:3211853/58‑1 (MQ=255) cGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCa < 1:1115037/59‑1 (MQ=255) gCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAgttgtt < 1:103263/71‑1 (MQ=255) gCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGAc > 1:1653020/1‑39 (MQ=255) gCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACttt < 1:3491413/42‑1 (MQ=255) gCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAgttgtt > 1:3126994/1‑71 (MQ=255) ccTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAgttgtt < 1:2694214/70‑1 (MQ=255) ccTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTc > 1:336072/1‑71 (MQ=255) cTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGa > 1:2367919/1‑36 (MQ=255) cTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTc > 1:1185614/1‑70 (MQ=255) tttGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTa < 1:3772516/40‑1 (MQ=255) tttGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTcca > 1:1027569/1‑71 (MQ=255) tttGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTcca > 1:1023091/1‑71 (MQ=255) ttGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTccac > 1:3491708/1‑71 (MQ=255) tGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAaca > 1:1101130/1‑50 (MQ=255) cTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTCCACCAt < 1:2696218/71‑1 (MQ=255) tGGCATCGCTCTTAATCGCAGTGGCATGGACTTTAt < 1:2581145/36‑1 (MQ=255) gCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAg < 1:3799119/50‑1 (MQ=255) gCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTCCACCATTTc < 1:3817448/71‑1 (MQ=255) gCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTCCACCATTTc < 1:3268943/71‑1 (MQ=255) gCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTACCACCATTTc > 1:3637485/1‑71 (MQ=255) cATCGCCCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACAcc < 1:3651295/46‑1 (MQ=255) aTCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTg > 1:1238023/1‑50 (MQ=255) gCTCTTAATCTCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTg < 1:1145470/47‑1 (MQ=255) gCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTg < 1:426780/47‑1 (MQ=255) gCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTCCACCATTTCCAGc < 1:580899/70‑1 (MQ=255) | GCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTCCACCATTTCCAGC > minE/1921041‑1921177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |