Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,933,057 G→C 14.0% V462V (GTC→GTG lysS ← lysine tRNA synthetase, constitutive

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,933,0570GC14.0% 289.8 / 30.5 114V462V (GTC→GTGlysSlysine tRNA synthetase, constitutive
Reads supporting (aligned to +/- strand):  ref base G (49/49);  new base C (8/8);  total (57/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 118 total aligned reads displayed.

AGCATTACCATACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGC  >  minE/1932989‑1933127
                                                                    |                                                                      
aGCATTACCATACGGTCGATACCAATTCCCAGACCTTCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGa                                                                       <  1:950687/70‑1 (MQ=255)
 gCATAATCATTCGGTCGATACCAATACCCAGACCAGCGGTTGGCGGCAGACCATATTCCAGCGCAGTCACg                                                                     >  1:1010793/1‑71 (MQ=255)
  cATTACCATACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACg                                                                     >  1:448310/1‑70 (MQ=255)
  cATTACCATACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGt                                                                    <  1:2788785/71‑1 (MQ=255)
    ttACCATACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTg                                                                        <  1:836498/65‑1 (MQ=255)
    ttACCATACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTaa                                                                  >  1:198306/1‑71 (MQ=255)
     tACCATACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAAt                                                                 >  1:3450901/1‑71 (MQ=255)
     aatcATTCGGTCGATACCAATACCCAGACCAGCGGTTGGCGGCAGACCATATTCCAGCGCAGTCACGTAAt                                                                 >  1:1777609/4‑71 (MQ=255)
      aCCATACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAAt                                                                 <  1:3606931/70‑1 (MQ=255)
      aCCATACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATc                                                                >  1:427271/1‑71 (MQ=255)
      aCCATACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATc                                                                >  1:2344956/1‑71 (MQ=255)
        cATACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCtt                                                              <  1:3122925/71‑1 (MQ=255)
         attcGGTCGATACCAATACCCAGACCAGCGGTTGGCGGCAGACCATATTCCAGCGCAGTCACGTAATCTTc                                                             <  1:1718938/68‑1 (MQ=255)
            cGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTg                                                                        <  1:1049062/57‑1 (MQ=255)
            cGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCAt                                                           <  1:2233645/70‑1 (MQ=255)
            cGGTAGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTc                                                             >  1:935135/1‑68 (MQ=255)
             ggTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCg                                                         <  1:2583459/71‑1 (MQ=255)
             ggTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCg                                                         <  1:3665241/71‑1 (MQ=255)
              gTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCg                                                         >  1:3580744/1‑70 (MQ=255)
              gTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGt                                                        <  1:2972254/71‑1 (MQ=255)
               tCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCg                                                         >  1:227480/1‑69 (MQ=255)
                 gATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTg                                                                        >  1:3552068/1‑52 (MQ=255)
                 gATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCg                                                         <  1:3441203/67‑1 (MQ=255)
                 gATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAg                                                      >  1:1471501/1‑70 (MQ=255)
                 gATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAg                                                      >  1:1807213/1‑70 (MQ=255)
                 gATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAg                                                      >  1:508248/1‑70 (MQ=255)
                  aTACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGaa                                                    <  1:458509/71‑1 (MQ=255)
                  aTACCAATACCCAGACCAGCGGTTGGCGGCAGACCATATTCCAGCGCAGTCACGTAATCTTCGTCATAGaa                                                    <  1:132951/71‑1 (MQ=255)
                  aTACCAATACCCAGACCAGCGGTTGGCGGCAGACCATATTCCAGCGCAGTCACGTAATCTTCGTCATAGaa                                                    <  1:549750/71‑1 (MQ=255)
                   tACAAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGa                                                     >  1:3182211/1‑69 (MQ=255)
                    aCCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAAc                                                   >  1:2634888/1‑70 (MQ=255)
                    aCCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACa                                                  >  1:3843692/1‑71 (MQ=255)
                     ccAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGa                                                                       >  1:1356223/1‑49 (MQ=255)
                        atacccAGACCAGCGGTTGGCGGCAGACCATATTCCAGCGCAGTCACGTAATCTTCGTCATAGAACATGGc                                              >  1:2026012/4‑71 (MQ=255)
                        aTTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGc                                              >  1:2041472/1‑71 (MQ=255)
                        aTTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGc                                              >  1:548675/1‑71 (MQ=255)
                        aTTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGc                                              >  1:2469833/1‑71 (MQ=255)
                        aTTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGc                                              >  1:14951/1‑71 (MQ=255)
                         ttCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCt                                             >  1:2388482/1‑71 (MQ=255)
                            ccAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACTTAATCTTCATCGTAGAACATCGCTccg                                          <  1:1694504/71‑1 (MQ=255)
                            ccAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcg                                          <  1:1022371/71‑1 (MQ=255)
                            ccAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcg                                          <  1:923091/71‑1 (MQ=255)
                            ccAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcg                                          <  1:1395967/71‑1 (MQ=255)
                            ccAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcg                                          <  1:3455080/71‑1 (MQ=255)
                              aGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATc                                                >  1:224271/1‑63 (MQ=255)
                              aGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcgtc                                        <  1:2562153/71‑1 (MQ=255)
                              aGACCAGCGGTTGGCGGCAGACCATATTCCAGCGCAGTCACGTAATCTTCGTCATAGAACATGGCTtcgtc                                        >  1:3440995/1‑71 (MQ=255)
                               gACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCg                                               >  1:618821/1‑63 (MQ=255)
                               gACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcgtcg                                       >  1:3809992/1‑71 (MQ=255)
                                aCCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTcgtcgt                                      <  1:2100237/71‑1 (MQ=255)
                                 ccTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCgtcgtc                                     <  1:1069018/71‑1 (MQ=255)
                                  ctgctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGt                                                        >  1:3359588/1‑51 (MQ=255)
                                  ctgctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAg                                                      <  1:1392547/53‑1 (MQ=255)
                                   tgctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGt                                                        >  1:1142805/1‑50 (MQ=255)
                                   tgctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGt                                                        >  1:3108360/1‑50 (MQ=255)
                                   tgctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATTGCTtcgtc                                        >  1:1449694/1‑66 (MQ=255)
                                   tgctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCt                                             >  1:2228414/1‑61 (MQ=255)
                                   tgctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcgtc                                        >  1:1406876/1‑66 (MQ=255)
                                    gctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCgtcgtc                                     >  1:776171/1‑68 (MQ=255)
                                    gctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCAcc                                  >  1:101896/1‑71 (MQ=255)
                                    gctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCAcc                                  >  1:1355711/1‑71 (MQ=255)
                                     ctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAAc                                                   >  1:3646882/1‑53 (MQ=255)
                                     ctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCt                                 <  1:2406103/71‑1 (MQ=255)
                                     ctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCt                                 <  1:3801730/71‑1 (MQ=255)
                                      tgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCAc                                   <  1:794000/68‑1 (MQ=255)
                                      tgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTg                                >  1:1639521/1‑71 (MQ=255)
                                        tCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCa                                                            <  1:1932364/41‑1 (MQ=255)
                                        tCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGa                                                     >  1:2602037/1‑48 (MQ=255)
                                        tCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGa                                                     >  1:244793/1‑48 (MQ=255)
                                        tCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGc                               <  1:1749900/70‑1 (MQ=255)
                                        tCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCg                              <  1:773795/71‑1 (MQ=255)
                                          ggcggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGt                             >  1:2236883/1‑70 (MQ=255)
                                          ggcggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTc                            <  1:51534/71‑1 (MQ=255)
                                           gcggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTa                                                       <  1:2612694/43‑1 (MQ=255)
                                           gcggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCg                                               <  1:636197/51‑1 (MQ=255)
                                           gcggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCAc                                   <  1:401731/63‑1 (MQ=255)
                                           gcggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTc                            <  1:1933875/70‑1 (MQ=255)
                                           gcggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCt                           <  1:2166646/71‑1 (MQ=255)
                                           gcggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCt                           <  1:1826420/71‑1 (MQ=255)
                                            cggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCtt                          >  1:2751356/1‑71 (MQ=255)
                                             ggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCttt                         <  1:1822936/71‑1 (MQ=255)
                                              gTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCAt                                                           <  1:1668258/36‑1 (MQ=255)
                                              gTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTc                        <  1:371382/71‑1 (MQ=255)
                                              gTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTc                        <  1:3943209/71‑1 (MQ=255)
                                                aaGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTcgc                      >  1:465693/1‑71 (MQ=255)
                                                 gaccATATTCCAGCGCAGTCACGTAATCTTCGTCATAGAACATGGCTTCGTCGTCACCTGCAGCTTTagca                     <  1:3303413/69‑2 (MQ=255)
                                                 gaccATATTCCAGCGCAGTCACGTAATCTTCGTCATAGAACATGGCTTCGTCGTCACCTGCAGCTTTagca                     <  1:3431786/69‑2 (MQ=255)
                                                     aTGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCt                                 <  1:3384045/55‑1 (MQ=255)
                                                     aTGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGc                   >  1:1187514/1‑69 (MQ=255)
                                                      tGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcgtc                                        <  1:655513/47‑1 (MQ=255)
                                                      tGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAAc                >  1:462003/1‑71 (MQ=255)
                                                        ttCCAGCGCAGTCACGTAATCTTCGTCATAGAACATGGCTTCGTCGTCACATGCAGCTTTagcatt                   >  1:3003156/1‑63 (MQ=255)
                                                          ccAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCt                           <  1:2700032/56‑1 (MQ=255)
                                                          ccAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGa            >  1:1081700/1‑71 (MQ=255)
                                                           cAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGAt           <  1:1971145/71‑1 (MQ=255)
                                                           cAGCGCAGTCACGTAATCTTCGTCATAGAACATGGCTTCGTCGTCAcc                                  <  1:2691026/48‑1 (MQ=255)
                                                            aGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATc          <  1:746536/71‑1 (MQ=255)
                                                              tGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATc          >  1:563076/1‑69 (MQ=255)
                                                                cGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAg       <  1:2388968/70‑1 (MQ=255)
                                                                    gACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGc  >  1:429908/1‑71 (MQ=255)
                                                                    |                                                                      
AGCATTACCATACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGC  >  minE/1932989‑1933127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: