Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,933,069 A→G 12.1% D458D (GAT→GAC lysS ← lysine tRNA synthetase, constitutive

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,933,0690AG12.1% 306.8 / 27.8 116D458D (GAT→GAClysSlysine tRNA synthetase, constitutive
Reads supporting (aligned to +/- strand):  ref base A (51/51);  new base G (7/7);  total (58/58)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.70e-01

Only 100 of 122 total aligned reads displayed.

TACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGCGTTGCGCCTGAT  >  minE/1932999‑1933139
                                                                      |                                                                      
tACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCa                                                                        <  1:221560/71‑1 (MQ=255)
  cGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCAt                                                                       <  1:2233645/70‑1 (MQ=255)
   ggTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCg                                                                     <  1:3665241/71‑1 (MQ=255)
   ggTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCg                                                                     <  1:2583459/71‑1 (MQ=255)
    gTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCg                                                                     >  1:3580744/1‑70 (MQ=255)
     tCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCg                                                                     >  1:227480/1‑69 (MQ=255)
       gATACCAATTCCCAGACTTGCTGTCGGCTGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGa                                                                 <  1:3717702/71‑1 (MQ=255)
       gATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCg                                                                     <  1:3441203/67‑1 (MQ=255)
       gATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAg                                                                  >  1:508248/1‑70 (MQ=255)
       gATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAg                                                                  >  1:1807213/1‑70 (MQ=255)
       gATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAg                                                                  >  1:1471501/1‑70 (MQ=255)
        aTACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGaa                                                                <  1:458509/71‑1 (MQ=255)
        aTACCAATACCCAGACCAGCGGTTGGCGGCAGACCATATTCCAGCGCAGTCACGTAATCTTCGTCATAGaa                                                                <  1:132951/71‑1 (MQ=255)
        aTACCAATACCCAGACCAGCGGTTGGCGGCAGACCATATTCCAGCGCAGTCACGTAATCTTCGTCATAGaa                                                                <  1:549750/71‑1 (MQ=255)
         tACAAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGa                                                                 >  1:3182211/1‑69 (MQ=255)
          aCCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAAc                                                               >  1:2634888/1‑70 (MQ=255)
          aCCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACa                                                              >  1:3843692/1‑71 (MQ=255)
           ccAATACCCAGACCAGCGGTTGGCGGCAGACCATATTCCAGCGCAGTCACGTAATCTTCGTCATAGAACAt                                                             >  1:3047784/1‑71 (MQ=255)
              atacccAGACCAGCGGTTGGCGGCAGACCATATTCCAGCGCAGTCACGTAATCTTCGTCATAGAACATGGc                                                          >  1:2026012/4‑71 (MQ=255)
              aTTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGc                                                          >  1:14951/1‑71 (MQ=255)
              aTTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGc                                                          >  1:2469833/1‑71 (MQ=255)
              aTTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGc                                                          >  1:548675/1‑71 (MQ=255)
              aTTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGc                                                          >  1:2041472/1‑71 (MQ=255)
               ttCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCt                                                         >  1:2388482/1‑71 (MQ=255)
               ttCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCt                                                         <  1:1395080/71‑1 (MQ=255)
                  ccAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcg                                                      <  1:3455080/71‑1 (MQ=255)
                  ccAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcg                                                      <  1:923091/71‑1 (MQ=255)
                  ccAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcg                                                      <  1:1022371/71‑1 (MQ=255)
                  ccAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcg                                                      <  1:1395967/71‑1 (MQ=255)
                    aGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCAt                                                                       >  1:23360/1‑52 (MQ=255)
                    aGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcgtc                                                    >  1:1968959/1‑71 (MQ=255)
                    aGACCAGCGGTTGGCGGCAGACCATATTCCAGCGCAGTCACGTAATCTTCGTCATAGAACATGGCTtcgtc                                                    >  1:606744/1‑71 (MQ=255)
                    aGACCAGCGGTTGGCGGCAGACCATATTCCAGCGCAGTCACGTAATCTTCGTCATAGAACATGGCTtcgtc                                                    >  1:3440995/1‑71 (MQ=255)
                    aGACCAGCGGTTGGCGGCAGACCATATTCCAGCGCAGTCACGTAATCTTCGTCATAGAACATGGCTtcgtc                                                    >  1:1605980/1‑71 (MQ=255)
                      aCCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTcgtcgt                                                  <  1:2100237/71‑1 (MQ=255)
                       ccTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCgtcgtc                                                 <  1:1069018/71‑1 (MQ=255)
                        ctgctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGt                                                                    >  1:3359588/1‑51 (MQ=255)
                        ctgctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAg                                                                  <  1:1392547/53‑1 (MQ=255)
                         tgctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGt                                                                    >  1:1142805/1‑50 (MQ=255)
                         tgctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGt                                                                    >  1:3108360/1‑50 (MQ=255)
                         tgctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCt                                                         >  1:2228414/1‑61 (MQ=255)
                         tgctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcgtc                                                    >  1:491385/1‑66 (MQ=255)
                         tgctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcgtc                                                    >  1:1406876/1‑66 (MQ=255)
                          gctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCAcc                                              >  1:101896/1‑71 (MQ=255)
                           ctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAAc                                                               >  1:3646882/1‑53 (MQ=255)
                           ctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCt                                             <  1:3801730/71‑1 (MQ=255)
                           ctgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCt                                             <  1:2406103/71‑1 (MQ=255)
                            tgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCAc                                               <  1:794000/68‑1 (MQ=255)
                            tgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTg                                            >  1:3416936/1‑71 (MQ=255)
                            tgTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTg                                            >  1:1639521/1‑71 (MQ=255)
                              tCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCa                                                                        <  1:1932364/41‑1 (MQ=255)
                              tCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGa                                                                 >  1:249419/1‑48 (MQ=255)
                              tCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGa                                                                 >  1:244793/1‑48 (MQ=255)
                              tCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGa                                                                 >  1:2602037/1‑48 (MQ=255)
                              tCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGc                                           <  1:1749900/70‑1 (MQ=255)
                              tCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCg                                          <  1:773795/71‑1 (MQ=255)
                                ggcggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGt                                         >  1:2236883/1‑70 (MQ=255)
                                 gcggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTa                                                                   <  1:2612694/43‑1 (MQ=255)
                                 gcggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCg                                                           <  1:1780924/51‑1 (MQ=255)
                                 gcggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCg                                                           <  1:636197/51‑1 (MQ=255)
                                 gcggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCAc                                               <  1:401731/63‑1 (MQ=255)
                                 gcggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCAc                                               <  1:792217/63‑1 (MQ=255)
                                 gcggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTc                                        <  1:1933875/70‑1 (MQ=255)
                                  cggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCtt                                      >  1:2751356/1‑71 (MQ=255)
                                   ggTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCttt                                     <  1:1822936/71‑1 (MQ=255)
                                    gTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCAt                                                                       <  1:1668258/36‑1 (MQ=255)
                                    gTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTc                                    <  1:3943209/71‑1 (MQ=255)
                                    gTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTc                                    <  1:371382/71‑1 (MQ=255)
                                      aaGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTcgc                                  >  1:465693/1‑71 (MQ=255)
                                       gaccATATTCCAGCGCAGTCACGTAATCTTCGTCATAGAACATGGCTTCGTCGTCACCTGCAGCTTTagca                                 <  1:3431786/69‑2 (MQ=255)
                                       gaccATATTCCAGCGCAGTCACGTAATCTTCGTCATAGAACATGGCTTCGTCGTCACCTGCAGCTTTagca                                 <  1:3303413/69‑2 (MQ=255)
                                           aTGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCt                                             <  1:3384045/55‑1 (MQ=255)
                                           aTGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGc                               >  1:1187514/1‑69 (MQ=255)
                                            tGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTtcgtc                                                    <  1:655513/47‑1 (MQ=255)
                                            tGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAAc                            >  1:462003/1‑71 (MQ=255)
                                              ttCCAGCGCAGTCACGTAATCTTCGTCATAGAACATGGCTTCGTCGTCACATGCAGCTTTagcatt                               >  1:3003156/1‑63 (MQ=255)
                                                ccAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCt                                       <  1:2700032/56‑1 (MQ=255)
                                                ccAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGa                        >  1:1081700/1‑71 (MQ=255)
                                                 cAGCGCAGTCACGTAATCTTCGTCATAGAACATGGCTTCGTCGTCAcc                                              <  1:2691026/48‑1 (MQ=255)
                                                  aGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATc                      <  1:746536/71‑1 (MQ=255)
                                                    tGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATc                      >  1:563076/1‑69 (MQ=255)
                                                           aCGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCtt                                      <  1:192207/46‑1 (MQ=255)
                                                           aCGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGc              <  1:2875832/70‑1 (MQ=255)
                                                           aCGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGCg             <  1:1330031/71‑1 (MQ=255)
                                                            cGTAATCTTCGTCATAGAACATGGCTTCGTCGTCACCTGCAGCTTTAGCATTAACCTGTTCCTGGAAACGt            <  1:2198952/71‑1 (MQ=255)
                                                             gTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGAt                       >  1:1103000/1‑59 (MQ=255)
                                                             gTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGAt                       >  1:2021538/1‑59 (MQ=255)
                                                             gTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGCGtt           <  1:2438942/71‑1 (MQ=255)
                                                              tAATCTTCATCGTAGAACATCGCTTCTTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGCg             <  1:2984257/68‑1 (MQ=255)
                                                              tAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTcgcg                                 <  1:906911/48‑1 (MQ=255)
                                                              tAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGCg             <  1:1175115/68‑1 (MQ=255)
                                                               aaTCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGAt                       >  1:2283533/1‑57 (MQ=255)
                                                               aaTCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGCGTTgc         >  1:2933978/1‑71 (MQ=255)
                                                                aTCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGCGTTgcg        >  1:3277849/1‑71 (MQ=255)
                                                                aTCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGCGTTgc         <  1:3570258/70‑1 (MQ=255)
                                                                   ttCGTCATAGAACATGGCTTCGTCGTCACCTGCAGCTTTAGCATTAACCTGTTcc                     >  1:3735240/1‑55 (MQ=255)
                                                                     cATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGCGTTGCGCCTGa   >  1:646527/1‑71 (MQ=255)
                                                                      aTCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGCg             >  1:379081/1‑60 (MQ=255)
                                                                      aTCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGCGTTGCGCCTGa   <  1:1915100/70‑1 (MQ=255)
                                                                      aTCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGCGTTGCGCCTGAt  >  1:384461/1‑71 (MQ=255)
                                                                      |                                                                      
TACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTCCAGTGCGGTGACGTAATCTTCATCGTAGAACATCGCTTCGTCGTCACCTGCGTCTTTCGCGGCAACCTGATCCAGGAAGCGTTGCGCCTGAT  >  minE/1932999‑1933139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: