| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,026,414 | G→A | 28.2% | intergenic (‑173/+61) | plsC ← / ← parC | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/DNA topoisomerase IV, subunit A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,026,414 | 0 | G | A | 28.2% | 68.3 / 29.6 | 46 | intergenic (‑173/+61) | plsC/parC | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/DNA topoisomerase IV, subunit A |
| Reads supporting (aligned to +/- strand): ref base G (10/23); new base A (6/7); total (16/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.57e-01 | |||||||||||
CATGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATAT > minE/2026347‑2026475 | cATGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACAACt < 1:2410535/71‑1 (MQ=255) tGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTa < 1:2697975/71‑1 (MQ=255) aaTAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGTGTTGAATACGCTGCCGGATGACAACTTaa < 1:1071133/70‑1 (MQ=255) aTAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACg < 1:2752891/71‑1 (MQ=255) aTAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACg > 1:3457167/1‑71 (MQ=255) acaacGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTc < 1:1048795/71‑1 (MQ=255) caacGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCa < 1:2172273/71‑1 (MQ=255) ggTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCg < 1:55748/71‑1 (MQ=255) aaGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACAACTTAACGTTTCATCCGGCGTTc > 1:3376405/1‑71 (MQ=255) aaGGGAATTTTTATCGTTTCC‑‑GGGTTGAATACGCTGCCGGATGACAACTTAACGTTTCATCCGGCGTTcc < 1:712801/70‑1 (MQ=255) aGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTcc < 1:2173621/71‑1 (MQ=255) gAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTg > 1:1633426/1‑71 (MQ=255) aaTTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTg > 1:1241884/1‑70 (MQ=255) aTTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGt > 1:1848779/1‑51 (MQ=255) aTTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGt > 1:1118640/1‑51 (MQ=255) tttttATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACAACTTAACGTTTCATCCGGCGTTCCTTGc > 1:738873/1‑69 (MQ=255) tttATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAg < 1:3878152/70‑1 (MQ=255) tttATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAg < 1:333794/70‑1 (MQ=255) tCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCggg < 1:571258/70‑1 (MQ=255) tCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCggg < 1:3331750/70‑1 (MQ=255) gTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGt > 1:2424388/1‑54 (MQ=255) gTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggag < 1:1695605/70‑1 (MQ=255) gTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggag < 1:3401091/70‑1 (MQ=255) tttCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggag < 1:1999039/69‑1 (MQ=255) tttCCGGGGGTTGAATACGCTGCCGGATGACAACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggagga < 1:2390541/71‑1 (MQ=255) tCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGaaa > 1:3035065/1‑71 (MQ=255) cGGGGGTTGAATACGCTGCCGGATGACAACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGaaa < 1:196524/69‑1 (MQ=255) gggggTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAg < 1:1680763/71‑1 (MQ=255) ggggTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAg > 1:2659607/1‑70 (MQ=255) ggggTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAg < 1:2390752/70‑1 (MQ=255) ttGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGccc < 1:139113/71‑1 (MQ=255) aTACGCTGCCGGATGACAACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTccc > 1:834232/1‑71 (MQ=255) tACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggagga < 1:356957/56‑1 (MQ=255) tACGCTGCCGGATGACAACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTcccc > 1:1109005/1‑71 (MQ=255) aCGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCg > 1:2887142/1‑71 (MQ=255) cGCTGCCGGATGACAACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCg < 1:997647/70‑1 (MQ=255) tGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggagga < 1:3138873/51‑1 (MQ=255) gCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCata > 1:456757/1‑71 (MQ=255) gCCGGATGACAACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCata > 1:827867/1‑71 (MQ=255) ccGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGgga < 1:3185301/46‑1 (MQ=255) ccGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCatat < 1:362092/71‑1 (MQ=255) ccGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCatat < 1:748149/71‑1 (MQ=255) ccGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCatat < 1:752761/71‑1 (MQ=255) ccGGATGACAACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCatat > 1:3854940/1‑71 (MQ=255) cGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCgg < 1:2628094/65‑1 (MQ=255) tGACAACTTAACGTTTCATCCGGCGTTCCTTGCAAg < 1:3617025/36‑1 (MQ=255) | CATGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATAT > minE/2026347‑2026475 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |