Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 2,068,659 C→A 12.4% A377A (GCG→GCT aer ← fused signal transducer for aerotaxis sensory component and methyl accepting chemotaxis component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,068,6590CA12.4% 139.7 / 6.1 48A377A (GCG→GCTaerfused signal transducer for aerotaxis sensory component and methyl accepting chemotaxis component
Reads supporting (aligned to +/- strand):  ref base C (25/17);  new base A (2/4);  total (27/21)
Fisher's exact test for biased strand distribution p-value = 3.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.66e-01

CGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGT  >  minE/2068589‑2068727
                                                                      |                                                                    
cgcTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCAcgc                                                                      <  1:3004703/71‑1 (MQ=255)
  cTGCGGCTGGCTAAATGACGCACTTTCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACgcgc                                                                    <  1:1124074/71‑1 (MQ=255)
   tGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGcgcc                                                                   >  1:1183329/1‑71 (MQ=255)
   tGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGcgcc                                                                   >  1:1805957/1‑71 (MQ=255)
   tGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGcgcc                                                                   >  1:3499464/1‑71 (MQ=255)
     cGGCTGGCTAAATTACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGcgccgc                                                                 <  1:454314/71‑1 (MQ=255)
     cGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGcgccgc                                                                 <  1:1270620/71‑1 (MQ=255)
      ggctggctAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCt                                                                >  1:3540792/1‑71 (MQ=255)
        ctggctAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTc                                                              <  1:682898/71‑1 (MQ=255)
           gctAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCa                                                            <  1:2719636/70‑1 (MQ=255)
              aaaTGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCAccgc                                                        >  1:3403829/1‑71 (MQ=255)
              aaaTGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCAccgc                                                        >  1:231308/1‑71 (MQ=255)
                    cGCACTTCACCTGCCACTACCGCAAAACCACGCCCCTGCTCTCCGGCGCGAGCCGCTTCCACTGCCGCAtt                                                  <  1:3435111/71‑1 (MQ=255)
                    cGCACTTCACCTGCCACTACCGCAAAACCACGCCCCTGCTCTCCGGCGCGAGCCGCTTCCACTGCCGCAtt                                                  <  1:3730117/71‑1 (MQ=255)
                      cACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCa                                                <  1:2029644/71‑1 (MQ=255)
                      cACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCa                                                <  1:2034237/71‑1 (MQ=255)
                        cTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAgg                                              >  1:3333029/1‑71 (MQ=255)
                        cTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAgg                                              >  1:2422504/1‑71 (MQ=255)
                        cTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAgg                                              >  1:2427210/1‑71 (MQ=255)
                         ttCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAggg                                             >  1:3030166/1‑71 (MQ=255)
                          tcaccTGCCACTACCGCAAAACCACGCCCCTGCTCTCCGGCGCGAGCCGCTTCCACTGCCGCATTCAGGGc                                            >  1:2678180/4‑71 (MQ=255)
                          tCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGc                                            >  1:522385/1‑71 (MQ=255)
                           caccTGCCACTACCGCAAAACCACGCCCCTGCTCTCCGGCGCGAGCCGCTTCCACTGCCGCATTCAGGGc                                            <  1:203244/68‑1 (MQ=255)
                             ccTGCCACTACCGCAAAACCACGCCCCTGCTCTCCGGCGCGAGCCGCTTCCACTGCCGCATTCAGGGCCAg                                         <  1:712940/71‑1 (MQ=255)
                               tGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACcgccgc                                                     >  1:549988/1‑57 (MQ=255)
                               tGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCa                                                    >  1:437268/1‑58 (MQ=255)
                                gCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGaa                                       >  1:3066835/1‑70 (MQ=255)
                                gCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGaa                                       >  1:3533332/1‑70 (MQ=255)
                                 ccaccaCTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGaa                                       <  1:1781001/69‑1 (MQ=255)
                                 ccaccaCTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAat                                      <  1:436552/70‑1 (MQ=255)
                                   accacTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGaa                                       <  1:3054758/67‑1 (MQ=255)
                                       cTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTc                               >  1:564839/1‑71 (MQ=255)
                                        tGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCAt                                                   <  1:3442404/50‑1 (MQ=255)
                                        tGCAAAACCTTTGCCCTGTTCGCCGGCACCCGCCGCTTCCACCGCCGCAt                                                   <  1:797656/50‑1 (MQ=255)
                                         gCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCAc                                                           >  1:37272/1‑41 (MQ=255)
                                          cAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCt                              >  1:591776/1‑69 (MQ=255)
                                          cAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGa                            <  1:343315/71‑1 (MQ=255)
                                           aaaaCCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGaa                           <  1:3173156/71‑1 (MQ=255)
                                           aaaaCCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGa                            >  1:2974443/1‑70 (MQ=255)
                                            aaaCCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCa                                                    >  1:1879894/1‑45 (MQ=255)
                                            aaaCCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCa                                                    >  1:1016410/1‑45 (MQ=255)
                                              aCCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCa                                                            >  1:3699123/1‑35 (MQ=255)
                                              aCCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAAc                         >  1:2651862/1‑70 (MQ=255)
                                               accttGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGc                       <  1:2492293/68‑1 (MQ=255)
                                                     cccTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCa                                                >  1:1596129/1‑40 (MQ=255)
                                                      ccTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCg                <  1:2028251/71‑1 (MQ=255)
                                                      ccTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCg                <  1:1350658/71‑1 (MQ=255)
                                                       cTGCTCTCCGGCGCGAGCCGCTTCCACTGCCGCATTCAGGGCCAGAATATTGGTCTGGAAAGCAattc                  >  1:3663648/1‑66 (MQ=255)
                                                          ttCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCg                <  1:2259955/67‑1 (MQ=255)
                                                               ccgCACGCGCAGCCTCAACCGCCGCGTTCAAAGCCAGAATATTGGTCTGGAAGGCAATGCCGTCAAt           <  1:2790610/65‑1 (MQ=255)
                                                               cGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGc       >  1:1329879/1‑71 (MQ=255)
                                                                 gCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGa     <  1:3277613/71‑1 (MQ=255)
                                                                 gCACGCGCAGCCTCAACCGCCGCGTTCAAAGCCAGAATATTGGTCTGGAAGGCAat                    >  1:2499203/1‑56 (MQ=16)
                                                                  cACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCg      >  1:192375/1‑69 (MQ=255)
                                                                  cACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCg      >  1:3028283/1‑69 (MQ=255)
                                                                    cgcgCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGt  <  1:868334/71‑1 (MQ=255)
                                                                      |                                                                    
CGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGT  >  minE/2068589‑2068727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: