Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 2,094,813 A→G 8.6% G13G (GGT→GGC tdcG ← L‑serine dehydratase 3

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,094,8130AG 8.6% 185.9 / 8.0 70G13G (GGT→GGCtdcGL‑serine dehydratase 3
Reads supporting (aligned to +/- strand):  ref base A (44/20);  new base G (2/4);  total (46/24)
Fisher's exact test for biased strand distribution p-value = 1.71e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.08e-01

GCTACTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAGTGAAGT  >  minE/2094744‑2094883
                                                                     |                                                                      
gCTACTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGAc                                                                       >  1:1656447/1‑71 (MQ=255)
   aCTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGAc                                                                       >  1:2220794/1‑68 (MQ=255)
   aCTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCaa                                                                    >  1:228068/1‑71 (MQ=255)
       tCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATcc                                                                 >  1:844217/1‑70 (MQ=255)
          aGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAAt                                                             <  1:2269486/71‑1 (MQ=255)
            ccGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAAttt                                                           <  1:2829431/71‑1 (MQ=255)
                 cAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCa                                                               >  1:2769049/1‑62 (MQ=255)
                      aaaCTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATc                                                 >  1:1161045/1‑71 (MQ=255)
                        ttgtttaCCCGCTTTCATTGGTCCAACGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGAAAATATCg                                                >  1:716263/4‑70 (MQ=255)
                         cTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGaa                                              >  1:1424773/1‑71 (MQ=255)
                         cTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGaa                                              >  1:1677234/1‑71 (MQ=255)
                          tttttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCa                                                               <  1:666668/53‑1 (MQ=255)
                           ttttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCa                                                               >  1:1399229/1‑52 (MQ=255)
                           ttttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg                                            >  1:2781429/1‑71 (MQ=255)
                           ttttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCACAATTTTGAAAATATCGAATg                                            >  1:2286589/1‑71 (MQ=255)
                            tttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCaa                                                              >  1:3692426/1‑52 (MQ=255)
                            tttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg                                            >  1:2389924/1‑70 (MQ=255)
                            tttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg                                            >  1:691851/1‑70 (MQ=255)
                              tCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGAcc                                                                      >  1:1734414/1‑42 (MQ=255)
                                  gctttcattGGTCCAACGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGAAAATATCGAATACGCTAAt                                     >  1:2976114/4‑71 (MQ=255)
                                   cattcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg                                            >  1:2490450/1‑63 (MQ=255)
                                    tttcattGGTCCAACGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGAAAATATCGaa                                              <  1:3824543/59‑1 (MQ=255)
                                    attcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGa                                                        >  1:1959186/1‑50 (MQ=255)
                                     ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaaaa                                                     >  1:324940/1‑52 (MQ=255)
                                      tcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCata                                 >  1:3131267/1‑71 (MQ=255)
                                       cattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCatat                                >  1:919355/1‑71 (MQ=255)
                                        attGGTCCAACGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGAAAATATCGAAtac                                           <  1:2428345/59‑3 (MQ=255)
                                        attGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg                                                <  1:430453/54‑1 (MQ=255)
                                         ttGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAat                                                    <  1:1707496/49‑1 (MQ=255)
                                          tGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAata                                                   >  1:2180987/1‑49 (MQ=255)
                                          tGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCca                             >  1:1812294/1‑71 (MQ=255)
                                             ccccACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaaaa                                                     <  1:1680818/44‑1 (MQ=255)
                                              cccACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaaa                                                      <  1:514929/42‑1 (MQ=255)
                                               ccACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaa                                                       <  1:2947819/40‑1 (MQ=255)
                                                  cGGTATGCGAAGTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCcaca                           >  1:203314/1‑65 (MQ=255)
                                                  cGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaaaa                                                     >  1:2068757/1‑39 (MQ=255)
                                                  cGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGaa                                              >  1:1134163/1‑46 (MQ=255)
                                                  cGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCtag                     >  1:807733/1‑69 (MQ=255)
                                                  cGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCg                     <  1:2638756/71‑1 (MQ=255)
                                                  cGGTATGCGAACTGGAGGGACCAATCCAAATTTTGAAAATATAGa                                               >  1:2155893/1‑45 (MQ=38)
                                                    gTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAat                                                    >  1:1799083/1‑38 (MQ=255)
                                                    gTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAat                                                    >  1:1159900/1‑38 (MQ=255)
                                                    gTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAat                                                    >  1:2169022/1‑38 (MQ=255)
                                                    gTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTa                                       <  1:3131447/51‑1 (MQ=255)
                                                    gTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGa                   <  1:2363500/71‑1 (MQ=255)
                                                     tATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACAccc                        <  1:1408336/65‑1 (MQ=255)
                                                     tATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGAt                  <  1:908722/71‑1 (MQ=255)
                                                      aTGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGAtt                 >  1:904506/1‑71 (MQ=255)
                                                      aTGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGAtt                 >  1:2188270/1‑71 (MQ=255)
                                                        gCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATc                               >  1:1757316/1‑55 (MQ=255)
                                                         cGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGcc              >  1:2267187/1‑71 (MQ=255)
                                                          gAACTTGAGGGACCAATCCCAATTTTGAAAATATCg                                                <  1:2000894/36‑1 (MQ=255)
                                                          gAACTGGAGGGACCAATCCCAATTTTGAAAATATCGaa                                              >  1:2172706/1‑38 (MQ=255)
                                                          gAACTGGAAGGGCCAATGCCGATTTTGAAAATATCGAATACGCTAATCa                                   <  1:1218923/49‑1 (MQ=19)
                                                          gAACTGGAAGGGCCAATGCCGATTTTGAAAATATCGAATACGCTAATCa                                   <  1:939699/49‑1 (MQ=19)
                                                           aaCTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCata                                 >  1:1754043/1‑50 (MQ=255)
                                                            aCTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGtt           >  1:2632604/1‑71 (MQ=255)
                                                            aCTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGtt           >  1:2097949/1‑71 (MQ=255)
                                                             cTGGAGGGACCAATCCCAATTTTGAAAATATCGaa                                              >  1:2582/1‑35 (MQ=255)
                                                             cTGGAGGGACCAATCCCAATTTTGAAAATATCGaa                                              >  1:3097608/1‑35 (MQ=255)
                                                             cTGGAGGGACCAATCCCAATATTGAAAATATCGaa                                              >  1:1620267/1‑35 (MQ=255)
                                                                gAGGGACCAATCCCAATTTTGAAAATATCGAATGCAc                                         <  1:3471092/37‑1 (MQ=255)
                                                                gAGGGACCAATCCCAATTTTGAAAATATCGAATGCAc                                         <  1:3468271/37‑1 (MQ=255)
                                                                gAGGGACCAATCCCAATTTTGAAAATATCGAATGCAc                                         <  1:2924990/37‑1 (MQ=255)
                                                                gAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGa                   >  1:1126004/1‑59 (MQ=255)
                                                                 aGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAGTg      <  1:1981665/71‑1 (MQ=255)
                                                                  gggACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAGTg      >  1:284978/1‑70 (MQ=255)
                                                                   ggACCAATCCCAATTTTGAAAATATCGAATGCACTAATCata                                 <  1:2819680/42‑1 (MQ=255)
                                                                   ggACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTg                >  1:1828808/1‑59 (MQ=255)
                                                                    gACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAGTGAAg   <  1:3177156/71‑1 (MQ=255)
                                                                     aCCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAGTGAAg   <  1:3632857/70‑1 (MQ=255)
                                                                     aCCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAGTGAAg   <  1:3016498/70‑1 (MQ=255)
                                                                     aCCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAGTGAAg   <  1:2163052/70‑1 (MQ=255)
                                                                     aCCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAGTGAAGt  <  1:3189754/71‑1 (MQ=255)
                                                                     |                                                                      
GCTACTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCCGTTCAGTGAAGT  >  minE/2094744‑2094883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: