Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 2,376,834 | G→A | 10.6% | V518V (GTC→GTT) | ubiB ← | 2‑octaprenylphenol hydroxylase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 2,376,834 | 0 | G | A | 10.6% | 262.6 / 17.1 | 94 | V518V (GTC→GTT) | ubiB | 2‑octaprenylphenol hydroxylase |
Reads supporting (aligned to +/- strand): ref base G (44/40); new base A (4/6); total (48/46) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.19e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 |
ACCGACAAACCAGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGTCCCT > minE/2376765‑2376901 | aCCGACAAACCAGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGa > 1:1076328/1‑71 (MQ=255) ccGACAAACCAGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGAc > 1:660685/1‑71 (MQ=255) ccGACAAACCAGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTAAc < 1:2912042/71‑1 (MQ=255) cGACAAACCAGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGAc > 1:1209584/1‑70 (MQ=255) cGACAAACCAGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGAc > 1:2355985/1‑70 (MQ=255) cGACAAACCAGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGAc > 1:3190425/1‑70 (MQ=255) aaaCCAGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTAACcaac > 1:1483493/1‑70 (MQ=255) aCCAGGCGATCAGACCACCTGCCATTAACCAGCCTGGCATCAGCCCCCATTCAGGTCGGCTGAcc < 1:646073/65‑1 (MQ=255) aCCAGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACcaac > 1:142498/1‑68 (MQ=255) ccAGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAg > 1:3224215/1‑70 (MQ=255) ccAGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGa < 1:820120/71‑1 (MQ=255) cAGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGaa > 1:1598724/1‑71 (MQ=255) aGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACcaa > 1:1296192/1‑64 (MQ=255) aGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAAt < 1:1357748/71‑1 (MQ=255) aGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAAt < 1:2583495/71‑1 (MQ=255) aGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAAt < 1:566805/71‑1 (MQ=255) ggCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTAACCAACAAGAAt < 1:695354/70‑1 (MQ=255) gCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAAtgt < 1:2991693/71‑1 (MQ=255) gCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAAtgt > 1:3330334/1‑71 (MQ=255) ggATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACAAACAAGAAtgtg > 1:3621317/2‑71 (MQ=255) cGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAAtgtg > 1:2302760/1‑71 (MQ=255) gATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGc > 1:782933/1‑71 (MQ=255) tCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCa < 1:3387727/71‑1 (MQ=255) tCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCa > 1:548547/1‑71 (MQ=255) tCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCa < 1:1090802/71‑1 (MQ=255) cAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGcc > 1:2337749/1‑69 (MQ=255) aGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCAc < 1:3081840/70‑1 (MQ=255) ccaccTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTaa > 1:2492698/1‑71 (MQ=255) cTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATAc > 1:2997705/1‑70 (MQ=255) tGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTaa < 1:3406727/66‑1 (MQ=255) tGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATa < 1:1777576/68‑1 (MQ=255) tGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACt > 1:3248619/1‑70 (MQ=255) gCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTg < 1:1714773/42‑1 (MQ=255) gCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGc < 1:268733/58‑1 (MQ=255) ccATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAAc > 1:744029/1‑71 (MQ=255) cATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACg < 1:1831394/71‑1 (MQ=255) aTTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGt < 1:220094/71‑1 (MQ=255) aTTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTAACCAACAAGAATGTGCCACTTAATACTAACg < 1:39706/70‑1 (MQ=255) ttAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGcc < 1:2815010/55‑1 (MQ=255) ttAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGcc < 1:3206477/55‑1 (MQ=255) ttAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACg > 1:22290/1‑69 (MQ=255) tAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAg > 1:442796/1‑71 (MQ=255) aaCCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCAc > 1:3315866/1‑55 (MQ=255) aaCCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAgc > 1:40883/1‑71 (MQ=255) aaCCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAgc > 1:633655/1‑71 (MQ=255) aCCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAgc > 1:2719519/1‑70 (MQ=255) aCCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTAACcaaca > 1:2756807/1‑42 (MQ=255) ccAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGt < 1:1097428/66‑1 (MQ=255) cAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAAtgt < 1:2601259/47‑1 (MQ=255) aGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACtt < 1:834709/53‑1 (MQ=255) ccGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAAt < 1:3879842/71‑1 (MQ=255) ccGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAAt > 1:1333437/1‑71 (MQ=255) ccGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAAt > 1:1885501/1‑71 (MQ=255) cGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAAt < 1:3724555/70‑1 (MQ=255) ggCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTcc < 1:2900870/71‑1 (MQ=255) ggCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTcc > 1:2072088/1‑71 (MQ=255) ggCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTc < 1:2993359/70‑1 (MQ=255) ggCATCAGCCCCCATTCAGGGCGGCTGACCAACAAGAATGTGCCACTTAATa < 1:2817367/52‑1 (MQ=255) gCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCg < 1:2257459/71‑1 (MQ=255) aTCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACt < 1:2398414/44‑1 (MQ=255) aTCAGCCCCCATTCAGGTCGGCTAACCAACAAGAATGTGCCACTTAATACTAACg < 1:1684554/55‑1 (MQ=255) tCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCAc > 1:3795629/1‑42 (MQ=255) cAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCga > 1:1752356/1‑68 (MQ=255) cAGCCCCCATTCAGGTCGGCTAACCAACAAGAATGTGCCAc > 1:3311697/1‑41 (MQ=255) gCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTa < 1:1648902/48‑1 (MQ=255) gCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTa < 1:1063357/48‑1 (MQ=255) gCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTa < 1:3365737/48‑1 (MQ=255) cccccATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAAt < 1:2192071/71‑1 (MQ=255) cccccATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAAATCCGAGAAAAt < 1:1931429/71‑1 (MQ=255) ccccATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAAt > 1:2180242/1‑70 (MQ=255) ccccATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAAt > 1:632777/1‑70 (MQ=255) cccATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGcc < 1:3250435/55‑1 (MQ=255) ccATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAAt < 1:3879401/68‑1 (MQ=255) cATTCAGGTCGGCTGCCCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATaa > 1:2206865/1‑69 (MQ=255) cATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTc > 1:1118364/1‑58 (MQ=255) cATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTc > 1:1419566/1‑58 (MQ=255) cATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATaa > 1:2761074/1‑69 (MQ=255) cATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcg < 1:3128775/71‑1 (MQ=255) aTTCAGGTCGGCTGACCAACAAGAATGTGCCACTTaa < 1:2850804/37‑1 (MQ=255) aTTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgc < 1:3607018/71‑1 (MQ=255) aTTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgc > 1:2782224/1‑71 (MQ=255) ttCAGGTCGGCTAACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTcc < 1:2197869/57‑1 (MQ=255) cAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCga > 1:2000905/1‑57 (MQ=255) cAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCga > 1:3742082/1‑57 (MQ=255) cAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGa < 1:2229776/70‑1 (MQ=255) cAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGa < 1:2160009/70‑1 (MQ=255) cAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGAt > 1:569773/1‑71 (MQ=255) gTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:1219613/71‑1 (MQ=255) tCGGCTAACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGTc < 1:3757994/71‑1 (MQ=255) cGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCga > 1:2556840/1‑52 (MQ=255) cGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGTcc > 1:2398275/1‑71 (MQ=255) ggCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGTccc > 1:3005672/1‑71 (MQ=255) gCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGTCCCt > 1:1565699/1‑71 (MQ=255) gCTAACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGTCCCt > 1:339775/1‑71 (MQ=255) cTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGaaaa < 1:399163/54‑1 (MQ=255) | ACCGACAAACCAGGCGATCAGACCACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGTCCCT > minE/2376765‑2376901 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |