BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	minE	2,570,782	C→T	6.0%	Y229Y (TAC→TAT)	yibH →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	minE	2,570,782	0	C	T	6.0%	314.9 / 6.3	100	Y229Y (TAC→TAT)	yibH	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (47/47); new base T (4/2); total (51/49)
Fisher's exact test for biased strand distribution p-value = 6.78e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.32e-01

Only 100 of 102 total aligned reads displayed.

TAAGAGCGCAACTTACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCGGTGATGGTCTTCA  >  minE/2570712‑2570852

tAAGAGCGCAACTTACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTAc                                                                        >  1:2667099/1‑71 (MQ=255)

 aaGAGCGCAACTTACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACg                                                                       >  1:367369/1‑71 (MQ=255)

   gagCGCAACTTACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGt                                                                      >  1:2672745/1‑70 (MQ=255)

    agCGCAACTTACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTa                                                                    >  1:95976/1‑71 (MQ=255)

      cgcAACTTACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACt                                                                  <  1:2765956/71‑1 (MQ=255)

      cgcAACTTACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACt                                                                  <  1:643878/71‑1 (MQ=255)

       gcAACTTACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTc                                                                 <  1:457105/71‑1 (MQ=255)

        cAACTTACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTc                                                                 <  1:1830841/70‑1 (MQ=255)

        cAACTTACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCa                                                                <  1:2194854/71‑1 (MQ=255)

         aaCTTACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGt                                                                      <  1:783101/64‑1 (MQ=255)

         aaCTTACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAg                                                               <  1:50951/71‑1 (MQ=255)

          aCTTACTGAAGCTAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAgg                                                              >  1:3601015/1‑71 (MQ=255)

          aCTTACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTa                                                                    >  1:896908/1‑65 (MQ=255)

          aCTTACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCa                                                                <  1:3559689/69‑1 (MQ=255)

            ttACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTa                                                            >  1:1399077/1‑71 (MQ=255)

             tACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTAc                                                           >  1:1561352/1‑71 (MQ=255)

             tACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTAc                                                           >  1:1409704/1‑71 (MQ=255)

             tACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTAc                                                           >  1:1029350/1‑71 (MQ=255)

              gcggAAGCAAAATATAACCTTGAGCAGACGATAGTGCGTGCGCCGAGCGATGGTTATGTGACCCAGGTACt                                                          <  1:2379157/68‑1 (MQ=255)

               cTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACt                                                          <  1:1591148/70‑1 (MQ=255)

               cTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACt                                                          <  1:2908671/70‑1 (MQ=255)

               cTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACt                                                          >  1:236619/1‑70 (MQ=255)

                tGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGa                                                        >  1:46339/1‑71 (MQ=255)

                tGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGa                                                        >  1:2540261/1‑71 (MQ=255)

                ggAAGCAAAATATAACCTTGAGCAGACGATAGTGCGTGCGCCGAGCGATGGTTATGTGACCCAGGTACTGa                                                        >  1:2949883/2‑71 (MQ=255)

                 gAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACt                                                          <  1:1056164/68‑1 (MQ=255)

                  aaGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGAt                                                       >  1:2247349/1‑70 (MQ=255)

                  aaGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATc                                                      >  1:1762874/1‑71 (MQ=255)

                   aGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATcc                                                     >  1:1456328/1‑71 (MQ=255)

                    gaaaaaTATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTc                                                                 <  1:1554036/56‑1 (MQ=255)

                    gCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCg                                                    >  1:1420436/1‑71 (MQ=255)

                     cAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGc                                                   >  1:1267847/1‑71 (MQ=255)

                      aaaaTATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAg                                                               >  1:2551507/1‑58 (MQ=255)

                      aaaaTATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAg                                                               >  1:3827925/1‑58 (MQ=255)

                      aaaaTATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAg                                                               >  1:203839/1‑58 (MQ=255)

                       aaaTATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCa                                                                >  1:193785/1‑56 (MQ=255)

                       aaaTATAACCTTGAGCAGACGATAGTGCGTGCGCCGAGCGATGGTTATGTGACCCAGGTACTGATTCGtcc                                                 >  1:2760089/1‑71 (MQ=255)

                       aaaTATAACCTTGAGCAGACGATAGTGCGTGCGCCGAGCGATGGTTATGTGACCCAGGTACTGATTCGtcc                                                 >  1:687261/1‑71 (MQ=255)

                            taACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCa                                                                <  1:2179532/51‑1 (MQ=255)

                            taACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGt                                             <  1:228450/70‑1 (MQ=255)

                            taACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTa                                            <  1:2530590/71‑1 (MQ=255)

                             atccTTGAGGAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTc                                                                 <  1:26174/47‑1 (MQ=255)

                              aCCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGAt                                                       >  1:1236603/1‑58 (MQ=255)

                              aCCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACa                                          <  1:597022/71‑1 (MQ=255)

                              aCCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACa                                          <  1:172741/71‑1 (MQ=255)

                               ccTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTa                                                            <  1:3372093/52‑1 (MQ=255)

                                cTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACAt                                         >  1:3429211/1‑70 (MQ=255)

                                cTTGAGCAGACGATAGTGCGTGCGCCGAGCGATGGTTATGTGACCCAGGTACTGATTCGTCCGGGTACCTa                                        <  1:605910/71‑1 (MQ=255)

                                   gAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACg                                      <  1:219833/70‑1 (MQ=255)

                                    aGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGTTACATACGCa                                    <  1:124614/71‑1 (MQ=255)

                                    aGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATAc                                       <  1:2264375/68‑1 (MQ=255)

                                     gCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAg                                   <  1:1923624/71‑1 (MQ=255)

                                     gCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAg                                   >  1:3662023/1‑71 (MQ=255)

                                      cAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAg                                   <  1:2766676/70‑1 (MQ=255)

                                        gACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTAc                                                           <  1:2252279/44‑1 (MQ=255)

                                        gACTGTAATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTa                                            >  1:1486909/1‑59 (MQ=255)

                                         aCTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTa                                                            <  1:2367045/42‑1 (MQ=255)

                                         aCTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAg                                               >  1:2567420/1‑55 (MQ=255)

                                          cTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGAt                                                       >  1:3114791/1‑46 (MQ=255)

                                          cTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGcc                              <  1:2710821/71‑1 (MQ=255)

                                             tCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGt                                             >  1:3534992/1‑53 (MQ=255)

                                             tCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTg                           >  1:2686476/1‑71 (MQ=255)

                                               aTTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGcc                         >  1:3900848/1‑71 (MQ=255)

                                               aTTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGc                          <  1:292297/70‑1 (MQ=255)

                                                ttCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCg                        <  1:3869112/71‑1 (MQ=255)

                                                ttCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCg                        <  1:1976035/71‑1 (MQ=255)

                                                ttCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCg                        >  1:1142127/1‑71 (MQ=255)

                                                ttCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCg                        <  1:2242318/71‑1 (MQ=255)

                                                ttCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCg                        >  1:3757486/1‑71 (MQ=255)

                                                ttCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCg                        >  1:735532/1‑71 (MQ=255)

                                                 tCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGa                                                        >  1:523345/1‑38 (MQ=255)

                                                 tCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGa                                                        >  1:124238/1‑38 (MQ=255)

                                                 tCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGa                                                        >  1:3128848/1‑38 (MQ=255)

                                                 tCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGa                                                        >  1:3298004/1‑38 (MQ=255)

                                                  cgcgcgCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCt                      >  1:3438704/1‑71 (MQ=255)

                                                  cgcgcgCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCt                      >  1:3179459/1‑71 (MQ=255)

                                                   gcgcgcCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCt                      <  1:664843/70‑1 (MQ=255)

                                                   gcgcgcCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCt                      <  1:481804/70‑1 (MQ=255)

                                                     gcgcCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCg                   <  1:3418881/71‑1 (MQ=255)

                                                     gcgcCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCg                   <  1:43089/71‑1 (MQ=255)

                                                      cgcCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACAt                                         >  1:3166273/1‑48 (MQ=255)

                                                       gcCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTc                 >  1:1557229/1‑71 (MQ=255)

                                                        ccGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTc                 <  1:2240903/70‑1 (MQ=255)

                                                          gAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCgg              >  1:3315257/1‑71 (MQ=255)

                                                           aGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCg                   <  1:2927951/65‑1 (MQ=255)

                                                           aGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCGGt             <  1:3936123/71‑1 (MQ=255)

                                                           aGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCGGt             <  1:358038/71‑1 (MQ=255)

                                                            gCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGt                  >  1:2357414/1‑65 (MQ=255)

                                                             cAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCGGTGa           <  1:220481/71‑1 (MQ=255)

                                                             cAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCGGTGa           <  1:1659244/71‑1 (MQ=255)

                                                               aTGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCGGTGATg         >  1:895186/1‑71 (MQ=255)

                                                               aTGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCGGTGATg         <  1:2915519/71‑1 (MQ=255)

                                                                tGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCt                      <  1:3269496/57‑1 (MQ=255)

                                                                tGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCGGTGAt          <  1:1699239/69‑1 (MQ=255)

                                                                 ggCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCGGTGATgg        >  1:418068/1‑70 (MQ=255)

                                                                 ggCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCGGTGATGGt       >  1:3459218/1‑71 (MQ=255)

                                                                  gCTACGTTACTCAGGTACTGATCCGCCCAGGTACa                                          <  1:944794/35‑1 (MQ=255)

                                                                  gCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCGGTGATGGTc      >  1:3838290/1‑71 (MQ=255)

                                                                   cTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCGGTGATGGTCt     <  1:2534870/71‑1 (MQ=255)

                                                                      cGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCGGTGATGGTCTTCa  >  1:3808903/1‑71 (MQ=255)

TAAGAGCGCAACTTACTGAAGCAAAATATAACCTTGAGCAGACTGTCATTCGCGCGCCGAGCAATGGCTACGTTACTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCGGTGATGGTCTTCA  >  minE/2570712‑2570852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`