| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,595,306 | C→A | 33.3% | intergenic (‑11/+2) | arsC ← / ← arsB | arsenate reductase/arsenite/antimonite transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,595,306 | 0 | C | A | 33.3% | 133.1 / 62.4 | 84 | intergenic (‑11/+2) | arsC/arsB | arsenate reductase/arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base C (29/27); new base A (9/19); total (38/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.07e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.98e-01 | |||||||||||
TCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGA > minE/2595237‑2595375 | tcCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCa > 1:1889602/1‑71 (MQ=255)tcCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCa > 1:756080/1‑71 (MQ=255) ccAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCAt > 1:740956/1‑71 (MQ=255) cAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTAtctc < 1:2656478/68‑1 (MQ=255) cAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTAtctc < 1:1560621/68‑1 (MQ=255) cAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCa < 1:3209063/69‑1 (MQ=255) aGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTa < 1:99255/71‑1 (MQ=255) gCGTGTTGCGTGAGGTGCTACAGGCCGGGTTGTGATAGATGGTAATGTTGATCATATCAGTATCTAATTa > 1:3424739/1‑70 (MQ=255) gCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTa > 1:2326959/1‑70 (MQ=255) gCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTAc < 1:2753213/71‑1 (MQ=255) gCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTa > 1:1590420/1‑70 (MQ=255) cGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACa < 1:3436311/71‑1 (MQ=255) aCGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTg > 1:3637173/1‑70 (MQ=255) aCGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTg < 1:754711/70‑1 (MQ=255) cgcgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTg < 1:1221495/69‑1 (MQ=255) cgcgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGa > 1:168189/1‑70 (MQ=255) gcgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGaaa < 1:2410225/71‑1 (MQ=255) cgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAag < 1:1810013/71‑1 (MQ=255) gACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga < 1:2542776/71‑1 (MQ=255) aggTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACaga < 1:2437832/68‑1 (MQ=255) ggTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTg < 1:529118/63‑1 (MQ=255) ggTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATAAGTATCTAATTACAAAGTg < 1:813768/63‑1 (MQ=255) cGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAagaga < 1:2427159/71‑1 (MQ=255) cGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga > 1:697413/1‑69 (MQ=255) cGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga > 1:1999142/1‑69 (MQ=255) tGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga < 1:716150/67‑1 (MQ=255) tGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACa < 1:3883971/57‑1 (MQ=255) gCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGAc > 1:2170751/1‑71 (MQ=255) gCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGAc > 1:655747/1‑71 (MQ=255) ccGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACg > 1:1950270/1‑71 (MQ=255) ccGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACg > 1:2712208/1‑71 (MQ=255) ccGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACg > 1:2716847/1‑71 (MQ=255) cGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCa < 1:949235/49‑1 (MQ=255) acAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCgcc < 1:1770789/70‑3 (MQ=255) cAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACaga > 1:3912182/1‑62 (MQ=255) aGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAgc < 1:3577484/71‑1 (MQ=255) gCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAgcgc < 1:828145/71‑1 (MQ=255) ccGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAagaga > 1:1028909/1‑60 (MQ=255) ggTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAgc > 1:3680107/1‑71 (MQ=255) ggTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAg > 1:2377166/1‑70 (MQ=255) gTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGaaa < 1:1481245/52‑1 (MQ=255) gTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGaaa < 1:1473824/52‑1 (MQ=255) gTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAgcg < 1:523028/71‑1 (MQ=255) gTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAgcg < 1:3544600/71‑1 (MQ=255) tgtgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAgcg > 1:1493478/1‑69 (MQ=255) gtgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcag > 1:2170121/1‑71 (MQ=255) gtgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcag > 1:2165543/1‑71 (MQ=255) tgATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggc < 1:3812469/71‑1 (MQ=255) tgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAg > 1:88660/1‑65 (MQ=255) gATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTg < 1:297475/44‑1 (MQ=38) aTAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcagcc < 1:2661785/70‑1 (MQ=255) agaTGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACagaga > 1:1274129/3‑48 (MQ=255) gaTGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggccagag < 1:3069942/70‑3 (MQ=255) gaTGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggccagag < 1:3065263/70‑3 (MQ=255) gaTGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggccaga < 1:570129/69‑2 (MQ=255) aaTGGTAATGTTGCTCATAACAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCg < 1:2762614/71‑1 (MQ=255) aTGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcagc > 1:3927779/1‑65 (MQ=255) aTGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGt > 1:1962623/1‑71 (MQ=255) aTGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGt < 1:570583/71‑1 (MQ=255) tGGTAATGTTGCTCATATCAGTATCTCATTACAAAg > 1:3343263/1‑36 (MQ=255) tAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTgaca < 1:820837/71‑1 (MQ=255) aTGTTGCTCATATCAGTATCTCATTACAAAGTGAAagagag > 1:3250760/1‑41 (MQ=255) aTGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACaa < 1:3403041/70‑1 (MQ=255) tGTTGCTCATATCAGTATCTCATTACAAAGTGAAagaga < 1:735226/39‑1 (MQ=255) tGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACaaa > 1:3213169/1‑70 (MQ=255) tGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGt < 1:3184317/64‑1 (MQ=255) tGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAAc < 1:3837190/71‑1 (MQ=255) gTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACg < 1:750201/42‑1 (MQ=255) gTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTcaca < 1:88415/67‑1 (MQ=255) gTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggccaga < 1:3459494/61‑2 (MQ=255) gTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggccaga < 1:3763272/61‑2 (MQ=255) gTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACaa > 1:1310177/1‑68 (MQ=255) tGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACAg > 1:2276807/1‑70 (MQ=255) gCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGt > 1:3826960/1‑40 (MQ=255) gCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGc < 1:3681216/70‑1 (MQ=255) cTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGca > 1:3836341/1‑70 (MQ=255) tCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGc < 1:3183512/68‑1 (MQ=255) tCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACAGcacc > 1:81486/1‑70 (MQ=255) cATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACaaa > 1:559926/1‑63 (MQ=255) atatCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcagg > 1:429480/1‑71 (MQ=255) atatCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcag < 1:3586054/70‑1 (MQ=255) atatCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACaaa < 1:3632121/62‑1 (MQ=255) tCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggca < 1:383569/70‑1 (MQ=255) tCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggca < 1:2755530/70‑1 (MQ=255) aGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAggg > 1:10222/1‑71 (MQ=255) tATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGt > 1:1847403/1‑70 (MQ=255) tctcTTTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCa < 1:2217803/70‑1 (MQ=255) cATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGa > 1:2259166/1‑70 (MQ=255) | TCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGA > minE/2595237‑2595375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |