Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 2,595,590 G→A 9.8% N336N (AAC→AAT arsB ← arsenite/antimonite transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,595,5900GA 9.8% 203.3 / 9.0 71N336N (AAC→AATarsBarsenite/antimonite transporter
Reads supporting (aligned to +/- strand):  ref base G (24/40);  new base A (2/5);  total (26/45)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01

CTTCTTTGATAACGCCAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCGGTGCCGAGCGTCGCGGCCCACAGGCCGTTATCC  >  minE/2595520‑2595659
                                                                      |                                                                     
cttcttTGATAACGCCAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTg                                                                       <  1:2641752/71‑1 (MQ=255)
cttcttTGATAACGCCAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTg                                                                       >  1:1063083/1‑71 (MQ=255)
   cttTGATAACGCCAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGtt                                                                     <  1:3518380/70‑1 (MQ=255)
   cttTGATAACGCCAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGt                                                                      <  1:2901691/69‑1 (MQ=255)
   cttTGATAACGCCAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGt                                                                      <  1:1413438/69‑1 (MQ=255)
   cttTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGtt                                                                     >  1:3001570/1‑70 (MQ=255)
    tttGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGTTCa                                                                   >  1:1299074/1‑71 (MQ=255)
      tGATAACGCCAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCa                                                                   <  1:1517361/69‑1 (MQ=255)
       gATAACGCCAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCata                                                                 <  1:2228124/70‑1 (MQ=255)
        aTAACGCCAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCataat                                                               <  1:501691/71‑1 (MQ=255)
        aTAACGCCAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCat                                                                  >  1:3220389/1‑68 (MQ=255)
        aTAACGCCAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCat                                                                  >  1:1404703/1‑68 (MQ=255)
         tAACGCCAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCataata                                                              <  1:3771082/71‑1 (MQ=255)
         tAACGCCAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCataa                                                                >  1:3037491/1‑69 (MQ=255)
           aCGCCAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATag                                                             <  1:888457/70‑1 (MQ=255)
               cAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATagaa                                                           >  1:1563804/1‑68 (MQ=255)
                aGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATagaaga                                                         >  1:1388102/1‑69 (MQ=255)
                aGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAagaga                                                       <  1:3061942/71‑1 (MQ=255)
                 gATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTc                                                                    >  1:2859084/1‑57 (MQ=255)
                   tGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGa                                                    <  1:50266/71‑1 (MQ=255)
                     ccGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGaa                                                   <  1:3224139/70‑1 (MQ=255)
                      cGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGTTCATCACTGATGAGAGaaatg                                                 <  1:2904511/71‑3 (MQ=255)
                      cGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGTTCATCACTGATGAGAGaaatg                                                 <  1:201724/71‑3 (MQ=255)
                             ccATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTg                                            <  1:2708672/69‑1 (MQ=255)
                             ccATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTg                                            <  1:1184608/69‑1 (MQ=255)
                             ccATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTg                                            <  1:1307564/69‑1 (MQ=255)
                             ccATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTg                                            <  1:1413277/69‑1 (MQ=255)
                             ccATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGa                                           <  1:1579238/70‑1 (MQ=255)
                              cATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAg                                          >  1:3614976/1‑70 (MQ=255)
                               aTCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAgg                                         >  1:2517067/1‑70 (MQ=255)
                                tCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGaa                                       <  1:2784911/71‑1 (MQ=255)
                                tCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGTTCATCACTGATGAGAGaaa                                                   >  1:493222/1‑59 (MQ=255)
                                tCAATCGACAGCGAACCAATCAGCACCGTCGGCATATTATTCATCACTGATGAGAGAAATGc                                                >  1:3547802/1‑62 (MQ=255)
                                 cAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGa                                           >  1:454727/1‑66 (MQ=255)
                                 cAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAAt                                      >  1:1365583/1‑71 (MQ=255)
                                  aaTGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAagaga                                                       >  1:2228250/1‑53 (MQ=255)
                                  aaTGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATc                                     >  1:2062411/1‑71 (MQ=255)
                                  aaTCGACAGCGCACCAATCAGCACCGTCGGCATATTGTTCATCACTGATGAGAGAAATGCCGTCAAGaag                                      <  1:1858041/70‑2 (MQ=255)
                                  aaTCGACAGCGCACCAATCAGCACCGTCGGCATATTATTCATCACTGACGAGAGAAATGCCGTCAAGaagc                                     <  1:1880062/71‑3 (MQ=255)
                                   aTGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATcc                                    >  1:2230069/1‑71 (MQ=255)
                                    tGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATagaaga                                                         <  1:2067647/49‑1 (MQ=255)
                                    tGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAgg                                                     <  1:1229662/53‑1 (MQ=255)
                                    tGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCg                                   >  1:3476805/1‑71 (MQ=255)
                                    tGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCg                                   <  1:3703989/71‑1 (MQ=255)
                                      gACAGCGCACCAATCAGCACCGTCGGCATATTATTCATCACTGATGAGAGAAATGCCGTCAAGAAGCCGGt                                 <  1:1177483/71‑1 (MQ=255)
                                      gACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGTCGGTGAGGAATCCGGt                                 <  1:2611145/71‑1 (MQ=255)
                                      gACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCgg                                  <  1:817798/70‑1 (MQ=255)
                                       aCAACGCGCCAACCAGTACCGTCGGCATATTGTTCat                                                                  >  1:1218260/1‑37 (MQ=255)
                                       aCAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATagaaga                                                         <  1:1834568/46‑1 (MQ=255)
                                        cAACGCGCCAACCAGTACCGTCGGCATATTGTTCataa                                                                <  1:3682830/38‑1 (MQ=255)
                                          gcgcaCCAATCAGCACCGTCGGCATATTATTCATCACTGATGAGAGAAATGCCGTCAAGAAGCCGGTGCCg                             <  1:2432020/70‑1 (MQ=255)
                                           cgcgCCAACCAGTACCGTCGGCATATTGTTCataa                                                                <  1:2287436/35‑1 (MQ=255)
                                            gcgcCAACCAGTACCGTCGGCATATTGTTCataat                                                               <  1:860889/35‑1 (MQ=255)
                                            gcgcCAACCAGTACCGTCGGCATATTGTTCataat                                                               <  1:3199146/35‑1 (MQ=255)
                                                cAATCAGCACCGTCGGCATATTATTCATCACTGAtgagaga                                                     <  1:1349700/41‑2 (MQ=255)
                                                cAACCAGTACCGTCGGCATATTGTTCATAATagaaga                                                         >  1:1452556/1‑37 (MQ=255)
                                                cAACCAGTACCGTCGGCATATTGTTCATAATagaaga                                                         >  1:3394895/1‑37 (MQ=255)
                                                 aaCCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAg                                          >  1:2587318/1‑51 (MQ=255)
                                                 aaCCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAg                                          >  1:773494/1‑51 (MQ=255)
                                                  aCCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCGGTGCCGAGCGTcgc                     <  1:317021/71‑1 (MQ=255)
                                                   tcAGCACCGTCGGCATATTATTCATCACTGATGAGAGAAATGCCGTCAAGAAGCCGGTGCCGAACGTcgat                    >  1:1449819/2‑69 (MQ=255)
                                                   ccAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCGGTGCCGAGCGTcgcg                    >  1:185886/1‑71 (MQ=255)
                                                     agcaCCGTCGGCATATTATTCATCACTGATGAGAGAAATGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGc                  <  1:3215003/68‑1 (MQ=255)
                                                        aCCGTCGGCATATTGTTCATCACTGATGAGAGAAATGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCca               <  1:2235688/71‑1 (MQ=255)
                                                          cGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCGGTGCCGAGCGTCGCGGCCcac              <  1:1424282/70‑1 (MQ=255)
                                                           gTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCGGTGCCGAGCGTCGCGGCCCACAg            <  1:3928906/71‑1 (MQ=255)
                                                            tCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCGGTGCCGa                            <  1:249413/54‑1 (MQ=255)
                                                            tCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCGGTGCCGAGCGTCGCGGCCcaca             <  1:1126770/69‑1 (MQ=255)
                                                              ggCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATc                                     >  1:536063/1‑43 (MQ=255)
                                                              ggCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCGGTGCCGAGCGTCGCGGCCCACAGGcc         <  1:2856962/71‑1 (MQ=255)
                                                               gCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCGGTGcc                              <  1:3830264/49‑1 (MQ=255)
                                                                 atatTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCGGTGCCGAGCGTcgcg                    <  1:3333826/57‑1 (MQ=255)
                                                                  tatTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCGGt                                 <  1:3353065/43‑1 (MQ=255)
                                                                      gTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCGGTGCCGAGCGTCGCGGCCCACAGGCCGTTATcc  <  1:1177307/70‑1 (MQ=255)
                                                                      |                                                                     
CTTCTTTGATAACGCCAGATGCCGTGCTGCCATCAATGGACAACGCGCCAACCAGTACCGTCGGCATATTGTTCATAATAGAAGAGAGGAAGGCGGTGAGGAATCCGGTGCCGAGCGTCGCGGCCCACAGGCCGTTATCC  >  minE/2595520‑2595659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: