| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,596,109 | A→G | 9.6% | V163V (GTT→GTC) | arsB ← | arsenite/antimonite transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,596,109 | 0 | A | G | 9.6% | 199.7 / 10.2 | 73 | V163V (GTT→GTC) | arsB | arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base A (28/38); new base G (3/4); total (31/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 | |||||||||||
CGCGGCGATATCCACCGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCA > minE/2596040‑2596176 | cgcgGCGATATCCACCGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGaaa > 1:3327534/1‑71 (MQ=255)cgcgGCGATATCCACCGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGaaa > 1:762590/1‑71 (MQ=255) gcggcgATATCCACCGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAAc < 1:3281810/71‑1 (MQ=255) gcggcgATATCCACCGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAAc < 1:3357981/71‑1 (MQ=255) gATATCCACCGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGatat < 1:1127373/71‑1 (MQ=255) gATATCCACCGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGatat < 1:212430/71‑1 (MQ=255) atatCCACCGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATAtt < 1:162433/71‑1 (MQ=255) tatCCACCGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAAc < 1:2776925/64‑1 (MQ=255) tatCCACCGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATAtt > 1:1732809/1‑70 (MQ=255) ccACCGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCAc > 1:3179704/1‑70 (MQ=255) cccGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCAc < 1:1863816/67‑1 (MQ=255) ccGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAgg < 1:606113/71‑1 (MQ=255) cGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACg > 1:2931477/1‑58 (MQ=255) cGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGata < 1:465757/61‑1 (MQ=255) cGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAg < 1:3276202/69‑1 (MQ=255) gCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTg < 1:2632470/71‑1 (MQ=255) aCCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGga < 1:2427126/71‑1 (MQ=255) cATAACGGAGGCGTACT‑GCGCAAAGCTCAGACCGAAGAAGTCCGCCGAGACGATATTCACCAGGTTAgaaa > 1:1756316/1‑69 (MQ=255) aTCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGAc < 1:855573/71‑1 (MQ=255) tCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGa > 1:1560873/1‑51 (MQ=255) tCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGAc > 1:228468/1‑70 (MQ=255) aCCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGga > 1:3771641/1‑65 (MQ=255) aCCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGga > 1:2201873/1‑65 (MQ=255) ccGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATa < 1:1929019/71‑1 (MQ=255) cGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATaa < 1:453881/71‑1 (MQ=255) gAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAg > 1:1513322/1‑71 (MQ=255) tATTCGCT‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGat < 1:644957/41‑1 (MQ=255) tATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCAc < 1:2234769/47‑1 (MQ=255) aTTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAgg > 1:1371377/1‑71 (MQ=255) ttCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGatat > 1:1864844/1‑41 (MQ=255) ttCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGa < 1:1952124/38‑1 (MQ=255) ttCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATAtt < 1:1329411/42‑1 (MQ=255) ttCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCAc < 1:3294984/45‑1 (MQ=255) ttCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGt < 1:2267484/50‑1 (MQ=255) ttCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGt < 1:496861/50‑1 (MQ=255) cgcg‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCa > 1:633443/1‑42 (MQ=255) cgcg‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCa > 1:3599048/1‑45 (MQ=255) cgcg‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAgg < 1:389335/47‑1 (MQ=255) cgcg‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAgg < 1:3072550/47‑1 (MQ=255) cgcg‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTg > 1:274491/1‑71 (MQ=255) gcg‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTgg > 1:1117304/1‑71 (MQ=255) gcg‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTgg < 1:1896383/71‑1 (MQ=255) cg‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGAc < 1:2733741/53‑1 (MQ=255) cg‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGAc < 1:2492156/53‑1 (MQ=255) cg‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGAc < 1:2396547/53‑1 (MQ=255) g‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATAtt < 1:876438/37‑1 (MQ=255) g‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCg < 1:2789780/71‑1 (MQ=255) aaaGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGc > 1:744467/1‑58 (MQ=255) aaGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCgg > 1:2877939/1‑70 (MQ=255) aaGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCgg > 1:2715622/1‑70 (MQ=255) aaGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCgg > 1:635676/1‑70 (MQ=255) aaGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGt < 1:203151/71‑1 (MQ=255) gCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTAt < 1:2529413/71‑1 (MQ=255) ccGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATc > 1:3677093/1‑71 (MQ=255) cGAGGCCAAAGAAATCAGCGTAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCg < 1:3030136/71‑1 (MQ=255) aGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTgg > 1:3900979/1‑40 (MQ=255) aGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGc < 1:1731717/71‑1 (MQ=255) gCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCaa > 1:2084086/1‑71 (MQ=255) ccAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAAt < 1:2061612/71‑1 (MQ=255) ccAAAGAAATAAGCGGAAACGATATTCACCAGGTTGGAGAc < 1:1967548/41‑1 (MQ=255) cgaagaagTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTa < 1:2746529/60‑1 (MQ=255) gaagaagTCCGCCGAGACGATATTCACCAGGTTAGAAACaa > 1:239345/2‑41 (MQ=12) gaagaagTCCGCCGAGACGATATTCACCAGGTTAGAAACAAtg < 1:881907/42‑2 (MQ=16) gaagaagTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAAtaa < 1:1599426/70‑3 (MQ=255) aaaGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATaa < 1:2609176/44‑1 (MQ=255) aaaGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATaa < 1:2669200/44‑1 (MQ=255) aagaagTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATaaa < 1:2122001/71‑1 (MQ=255) aaGAAATCAGCGGAAACGATATTCACCAGGTTGgaga > 1:1524877/1‑37 (MQ=255) aaGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGaa > 1:333578/1‑71 (MQ=255) aaGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGaa > 1:3449102/1‑71 (MQ=255) aGAAGTCCGCCGAGACGATATTCACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATct > 1:675806/1‑61 (MQ=255) aGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCg > 1:3522283/1‑56 (MQ=255) aGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAAt > 1:3510425/1‑71 (MQ=255) cGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGgccgc > 1:70191/1‑70 (MQ=255) ggAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGTTATCGGCAATGAATCCGGCCGCCa > 1:3568100/1‑71 (MQ=255) | CGCGGCGATATCCACCGGCACCATCACCGAGGCGTATTCGCG‑AAAGCCGAGGCCAAAGAAATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCA > minE/2596040‑2596176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |