Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 2,870,836 T→A 9.1% intergenic (+79/‑101) rnr → / → rlmB exoribonuclease R, RNase R/23S rRNA (Gm2251)‑methyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,870,8360TA 9.1% 117.2 / 4.4 44intergenic (+79/‑101)rnr/rlmBexoribonuclease R, RNase R/23S rRNA (Gm2251)‑methyltransferase
Reads supporting (aligned to +/- strand):  ref base T (25/15);  new base A (2/2);  total (27/17)
Fisher's exact test for biased strand distribution p-value = 6.34e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.48e-01

TCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAG  >  minE/2870767‑2870902
                                                                     |                                                                  
tctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCt                                                                    >  1:1742040/1‑70 (MQ=255)
 ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTa                                                                  >  1:1639825/1‑71 (MQ=255)
       aagaagAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                            <  1:2062498/71‑1 (MQ=255)
           agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                            >  1:3865793/1‑67 (MQ=255)
           agagGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                         >  1:3267578/1‑70 (MQ=255)
                 ttAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAAt                                                   >  1:2663924/1‑70 (MQ=255)
                 ttAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATc                                                  <  1:1877163/71‑1 (MQ=255)
                  tAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCa                                                 >  1:2724357/1‑71 (MQ=255)
                          tGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAAt                                          >  1:1385038/1‑70 (MQ=255)
                            aCAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTc                                        <  1:2085475/70‑1 (MQ=255)
                               aaaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAAtt                                         <  1:1681453/66‑1 (MQ=255)
                                aaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAata                                    >  1:3590558/1‑70 (MQ=255)
                                   gcgcTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTc                                        <  1:1032439/63‑1 (MQ=255)
                                       tttGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTg                               >  1:1111689/1‑68 (MQ=255)
                                       tttGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTg                               >  1:594597/1‑68 (MQ=255)
                                        ttGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCa                             >  1:3590846/1‑69 (MQ=255)
                                         tactCATGCCGGATGCGGCATGAGTACCATATCCTTCCTGAAAATCGCGCAAATTCTATATATTGCAgaga                         <  1:2149275/68‑1 (MQ=0)
                                         tGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAGTc                                                  <  1:3044267/47‑1 (MQ=12)
                                         tGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATc                                                  >  1:735710/1‑47 (MQ=255)
                                         tGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCag                            <  1:214200/69‑1 (MQ=255)
                                         tGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCa                             >  1:1678999/1‑68 (MQ=255)
                                          gTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCagag                          <  1:111531/70‑1 (MQ=255)
                                             cATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGGAAATTCAatata                                  >  1:915551/1‑59 (MQ=255)
                                             cATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCa                      >  1:1742993/1‑71 (MQ=255)
                                             cATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCa                      >  1:2753095/1‑71 (MQ=255)
                                              aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTc                                        <  1:1791198/52‑1 (MQ=255)
                                              aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCAt                     >  1:1381489/1‑71 (MQ=255)
                                              aTGCCGGATGCGGCATGAGTACCATATCCTTCCTGAAAATCGCGCAAATTCTATATATTGCAGAGATCAt                     <  1:1497375/70‑1 (MQ=2)
                                              aTGCCGGATGCGGCATGAGTACCATATCCTTCCTGAAAATCGCGCAAATTCTATATATTGCAGAGATCATg                    >  1:3755738/1‑71 (MQ=2)
                                               tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATg                    >  1:1513446/1‑71 (MQ=255)
                                               tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATg                    >  1:2739239/1‑71 (MQ=255)
                                                gCCGGATGCGGCATGAGTACCATATCCTTCCTGAAAATCGCGCAAATTCTATATATTGCAGAGATCATg                    >  1:2371438/1‑69 (MQ=2)
                                                    gATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCa                             >  1:3613271/1‑57 (MQ=255)
                                                     aTGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGcc              <  1:1259442/71‑1 (MQ=255)
                                                        cggcgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGa           <  1:2639664/71‑1 (MQ=255)
                                                          gcgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATa         <  1:2223766/71‑1 (MQ=255)
                                                           cgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGAt          >  1:1122297/1‑69 (MQ=255)
                                                           cgTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATaa        <  1:1004566/71‑1 (MQ=255)
                                                            gTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTg                               >  1:981004/1‑47 (MQ=255)
                                                              gAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACg     >  1:2682595/1‑71 (MQ=255)
                                                                aCGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACg     >  1:2712385/1‑69 (MQ=255)
                                                                aCGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACg     >  1:224174/1‑69 (MQ=255)
                                                                aCGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGt    <  1:546197/70‑1 (MQ=255)
                                                                aCGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTa   <  1:1516463/71‑1 (MQ=255)
                                                                 cGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAg  >  1:259278/1‑71 (MQ=255)
                                                                     |                                                                  
TCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCACGCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAG  >  minE/2870767‑2870902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: