| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,918,736 | A→C | 15.5% | R320R (CGT→CGG) | argI ← | ornithine carbamoyltransferase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,918,736 | 0 | A | C | 15.5% | 112.0 / 21.8 | 58 | R320R (CGT→CGG) | argI | ornithine carbamoyltransferase 1 |
| Reads supporting (aligned to +/- strand): ref base A (27/22); new base C (5/4); total (32/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 | |||||||||||
CCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGACTTCCATACCGC > minE/2918667‑2918806 | ccGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATa < 1:3155333/70‑1 (MQ=255) ggCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACg > 1:1256403/1‑70 (MQ=255) aTCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGttt < 1:2928845/71‑1 (MQ=255) aTCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGttt < 1:2762301/71‑1 (MQ=255) cTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTc > 1:623347/1‑71 (MQ=255) tttATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTcc > 1:1111846/1‑71 (MQ=255) tttATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTcc > 1:879681/1‑71 (MQ=255) taGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCt < 1:537347/71‑1 (MQ=255) aGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCt > 1:516079/1‑70 (MQ=255) aGCAATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCaa > 1:2296540/1‑70 (MQ=255) aGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCaa > 1:368211/1‑70 (MQ=255) aGCAATTATTTACTGAGCGTCGAGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCaa > 1:1151857/1‑70 (MQ=255) gCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCaaaa < 1:1594911/71‑1 (MQ=255) attattTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACa < 1:1452984/71‑1 (MQ=255) attattTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACa < 1:2201761/71‑1 (MQ=255) tattTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGc > 1:210804/1‑56 (MQ=255) attTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAAt > 1:1688317/1‑70 (MQ=255) tACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCt < 1:3499375/70‑1 (MQ=255) tACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTg > 1:1084860/1‑71 (MQ=255) tACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTg > 1:795772/1‑71 (MQ=255) tACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTg > 1:3032873/1‑71 (MQ=255) aCTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCt > 1:2843328/1‑53 (MQ=255) aCTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTg < 1:609998/70‑1 (MQ=255) tGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCaa < 1:2005096/57‑1 (MQ=255) tGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTggcg > 1:1903999/1‑71 (MQ=255) caaGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTcgcc > 1:527391/3‑70 (MQ=255) aaGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTcgccg > 1:1215440/2‑69 (MQ=255) aGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTcg < 1:1579608/54‑2 (MQ=255) aGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTggcgg > 1:1836579/1‑70 (MQ=255) aGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTggcgg < 1:3623585/70‑1 (MQ=255) gCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTg < 1:1589865/49‑1 (MQ=255) tCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGAt < 1:2444571/71‑1 (MQ=255) gcgACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTc > 1:1460201/1‑71 (MQ=255) cgACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTc > 1:1284918/1‑70 (MQ=255) aCCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCg > 1:3350507/1‑69 (MQ=255) tcATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGAt > 1:2305279/2‑52 (MQ=255) cATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTcgccgccg > 1:511659/1‑60 (MQ=255) aTCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCaaaca < 1:2276540/70‑3 (MQ=255) tCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGa < 1:2097934/66‑1 (MQ=255) ccGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCtca < 1:538164/71‑1 (MQ=255) cGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGa > 1:1843292/1‑65 (MQ=255) cGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTcg < 1:3110759/37‑2 (MQ=16) gCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCtcat > 1:2800896/1‑70 (MQ=255) gCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCtcat > 1:2259504/1‑70 (MQ=255) ttGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAg > 1:2546262/1‑70 (MQ=255) tGATAGTATGCATACGGTTTTCCGCCTGATCAAAAAc < 1:1141652/37‑1 (MQ=255) tGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCACATCAGt > 1:2475180/1‑70 (MQ=255) tGATAGTATGCATACGGTTTTCCACCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGt < 1:1433903/70‑1 (MQ=255) gTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGACTTc < 1:2289895/71‑1 (MQ=255) tATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCAAACACCTCGTCCGTCACCTcc < 1:3665075/71‑1 (MQ=255) tATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGACTTc > 1:2370965/1‑70 (MQ=255) tGCATACGGTTTTCCGCCTGATCAAAAACAATGCTggcg < 1:2991960/39‑1 (MQ=255) tGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGACTTCCAt < 1:2537598/71‑1 (MQ=255) gCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGaa > 1:3323714/1‑49 (MQ=255) gCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGACTTCCATa > 1:2586964/1‑71 (MQ=255) cATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCAAACACCTCGTCCGTCACCTCCAtcc > 1:3815328/1‑69 (MQ=255) cATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGa < 1:231261/47‑1 (MQ=255) tACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGAtt < 1:519165/42‑1 (MQ=255) tACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGACTTCCATAc < 1:3482601/69‑1 (MQ=255) aCGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGa > 1:627506/1‑47 (MQ=255) aCGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGACTTCCATACCGc > 1:3433599/1‑71 (MQ=255) | CCGGCATCTTTATAGCGATAGCAATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTCGAAGACCTCATCAGTGACTTCCATACCGC > minE/2918667‑2918806 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |