| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,919,291 | G→C | 8.7% | P135P (CCC→CCG) | argI ← | ornithine carbamoyltransferase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,919,291 | 0 | G | C | 8.7% | 226.9 / 9.7 | 80 | P135P (CCC→CCG) | argI | ornithine carbamoyltransferase 1 |
| Reads supporting (aligned to +/- strand): ref base G (34/39); new base C (2/5); total (36/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.49e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.89e-01 | |||||||||||
TCATTTCGTTGAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTATTCCGCCAGTGTTTCGACAAT > minE/2919224‑2919359 | tcctttCGTTGAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGa < 1:1672665/68‑1 (MQ=255)tCATTTCGTTGAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGa < 1:1495109/71‑1 (MQ=255) cATTTCGTTGAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGAt > 1:3709877/1‑71 (MQ=255) atctCGTTAAACGCCTTGCCCGGCAGGTGCTCCTGCATGGTCATCAGGTCCGCCAGCAGCTGGGTCGGGTg < 1:2544862/68‑1 (MQ=255) aTTTCGTTGAACGCTTTGCCTGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATg < 1:1517941/71‑1 (MQ=255) tttCGTTGAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGTGAAGATCCGCCAGCAGCTGCGTGGGATgg < 1:2800/71‑1 (MQ=255) tttCGTTGAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATgg < 1:291035/71‑1 (MQ=255) tttCGTTGAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATgg < 1:1516533/71‑1 (MQ=255) tttCGTTGAACGCTTTGCCGGGCAAATGCTCCTGAATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATgg < 1:2940543/71‑1 (MQ=255) cGTTGAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAAc > 1:464517/1‑71 (MQ=255) cGTTGAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAAc > 1:3500525/1‑71 (MQ=255) gTTAAACGCCTTGCCCGGCAGGTGCTCCTGCATGGTCATCAGGTCCGCCAGCAGCTGGGTCGGGTGGaa < 1:3462692/69‑1 (MQ=255) ttGAACGCTTTGCCGGGCAAATGGTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATgg > 1:16463/1‑66 (MQ=255) ttGAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTc < 1:1014133/71‑1 (MQ=255) ttGAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTc < 1:1671315/71‑1 (MQ=255) tGAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGTATGGAACTCa > 1:242989/1‑71 (MQ=255) tGAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTc < 1:856089/70‑1 (MQ=255) tGAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCa > 1:632586/1‑71 (MQ=255) gAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATTGAACTCa < 1:2928175/70‑1 (MQ=255) aaCGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATgg < 1:3392923/63‑1 (MQ=255) aaCGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCAt < 1:935183/70‑1 (MQ=255) aaCGCCTTGCCCGGCAGGTGCTCCTGCATGGTCATCAGGTCCGCCAGCAGCTGGGTCGGGTGGAACTcgt < 1:1989517/70‑3 (MQ=255) aaCGCCTTGCCCGGCAGGTGCTCCTGCATGGTCATCAGGTCCGCCAGCAGCTGGGTCGGGTGGAACTcgt < 1:3478967/70‑3 (MQ=255) gCTTTGCCGGGCAATTGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGt < 1:2727425/71‑1 (MQ=255) gCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGt < 1:2405156/71‑1 (MQ=255) gCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGt < 1:56103/71‑1 (MQ=255) tttGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGt > 1:25113/1‑69 (MQ=255) cttGCCCGGCAGGTGCTCCTGCATGGTCATCAGGTCCGCCAGCAGCTGGGTCGGGTCGAACTCGTTGGt > 1:260038/2‑69 (MQ=255) ttGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAg > 1:1152492/1‑71 (MQ=255) tGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAgg > 1:983456/1‑71 (MQ=255) gCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGc > 1:1081914/1‑71 (MQ=255) gCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGc > 1:356765/1‑71 (MQ=255) cGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGcc < 1:1194635/70‑1 (MQ=255) gggCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCAt < 1:2248350/71‑1 (MQ=255) ggCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCAtt < 1:3517193/71‑1 (MQ=255) ggCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCAtt < 1:3875150/71‑1 (MQ=255) gCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTc > 1:2506764/1‑71 (MQ=255) cAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTc > 1:3647491/1‑70 (MQ=255) cAAATGCTCCTGCATGGTGAGAAGATCCGCAAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTcc < 1:2330912/71‑1 (MQ=255) aaaTGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTcc > 1:1394035/1‑70 (MQ=255) aaaTGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCa > 1:3419366/1‑71 (MQ=255) aaTGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGa > 1:301951/1‑48 (MQ=255) aaTGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGa > 1:2164908/1‑48 (MQ=255) aaTGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCAtt > 1:2429364/1‑55 (MQ=255) aaTGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCAt < 1:1589273/71‑1 (MQ=255) aaTGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCAt < 1:2438395/71‑1 (MQ=255) aTGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATa < 1:738670/71‑1 (MQ=255) tGCTCCTGCATGGTCATCAGGTCCGCCAGCAGCTGGGTCGGGTGGaa > 1:278211/1‑47 (MQ=16) gCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATg > 1:3463126/1‑43 (MQ=255) gCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATAcc > 1:2131374/1‑71 (MQ=255) gCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATAcc > 1:1154139/1‑71 (MQ=255) tCCTGCATGGTGAGAAGATCCGCCAGCAGGTGCGTGGGATGGAACTCATTGGTCAgg > 1:1842506/1‑57 (MQ=255) tCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAg < 1:3008816/56‑1 (MQ=255) tCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAg < 1:4085/56‑1 (MQ=255) ccTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATTGAACTCATTGGTCAg < 1:3099690/55‑1 (MQ=255) cTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCa > 1:2599004/1‑71 (MQ=255) cTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGGCAGGCCATTCCATACCgg < 1:2504979/69‑1 (MQ=255) cTGCATGGTCATCAGGTCCGCCAGCAGCTGGGTCGGGTGGAACTCGTTGGTCAGCCCGTTCCACACCGGc < 1:2359793/70‑1 (MQ=255) gCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACg > 1:1567680/1‑71 (MQ=255) gCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACg > 1:254901/1‑71 (MQ=255) cATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGc < 1:985564/71‑1 (MQ=255) cATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGc < 1:1445464/71‑1 (MQ=255) aTGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGc > 1:1852288/1‑70 (MQ=255) tGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCg < 1:236448/71‑1 (MQ=255) agaagaTCCGCCAGCAGCTGCGTGGGATGGAACTCAt < 1:2142807/37‑1 (MQ=255) agaagaTCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTa < 1:3870150/71‑1 (MQ=255) gaagaTCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTAt > 1:2488977/1‑71 (MQ=255) gaagaTCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTAt < 1:1442393/71‑1 (MQ=255) agaTCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTATTc > 1:2220404/1‑71 (MQ=255) aTCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTc < 1:627250/37‑1 (MQ=255) tCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTATTCCGc > 1:2926612/1‑71 (MQ=255) cGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTATTCCGCCa < 1:2358888/71‑1 (MQ=255) cagcagCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTATTCCGcc < 1:1370370/67‑1 (MQ=255) cagcTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTATTCCGCCAGTGttt > 1:2596451/1‑71 (MQ=255) cagcTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTATTCCGCCAGTGttt > 1:2651682/1‑71 (MQ=255) agcTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTATTCCGCCAGTGTTTc < 1:568277/71‑1 (MQ=255) cTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTATTCCGCCAGTGttt < 1:2716573/68‑1 (MQ=255) cGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTATTCCGCCAGTGTTTCGACaa > 1:3275705/1‑71 (MQ=255) agTGGGATGGAACTCATTGGTCAGGCCATTCCATACAGGCACGCTAGCGt > 1:3782737/2‑50 (MQ=255) gTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTAt > 1:3475825/1‑51 (MQ=255) gggATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTATTCCGCCAGTGTTTCGACAAt > 1:1176296/1‑69 (MQ=255) | TCATTTCGTTGAACGCTTTGCCGGGCAAATGCTCCTGCATGGTGAGAAGATCCGCCAGCAGCTGCGTGGGATGGAACTCATTGGTCAGGCCATTCCATACCGGCACGCTAGCGTATTCCGCCAGTGTTTCGACAAT > minE/2919224‑2919359 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |